Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B05
         (401 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...   132   1e-31
AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical ...    33   0.10 
AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical ...    32   0.13 
AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical ...    32   0.13 
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    27   3.8  
AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical ...    27   3.8  
AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal pro...    27   3.8  
AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal pro...    27   3.8  
U39741-3|AAA80430.1|  163|Caenorhabditis elegans Hypothetical pr...    27   6.7  
AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical...    27   6.7  
Z82062-4|CAB04888.1|  266|Caenorhabditis elegans Hypothetical pr...    26   8.8  
Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical pr...    26   8.8  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score =  132 bits (318), Expect = 1e-31
 Identities = 66/125 (52%), Positives = 84/125 (67%), Gaps = 1/125 (0%)
 Frame = +1

Query: 19  MADVDVEVPANPV-LSGGAMDVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVL 195
           M+D   +V   P  ++ G MD   AL+ VL+ A    GL  GLHE  KALDKR+A  CVL
Sbjct: 1   MSDAGGDVQVAPAAVAQGPMDKEGALRAVLRAAHHADGLAKGLHETCKALDKREAHFCVL 60

Query: 196 AENCDEAAYNKLVQALCNEHQIPLVKVDNN*KLGEWAGLCKID*DGEARKIVGCSCVVLK 375
           AENCDE  Y KLV+ LC EHQIPL+KV +   +GE+ GLCK D +G+ARK+VGCS  V+ 
Sbjct: 61  AENCDEPQYVKLVETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVT 120

Query: 376 DFGEE 390
           ++G E
Sbjct: 121 NWGNE 125


>AL023844-2|CAA19527.1|  163|Caenorhabditis elegans Hypothetical
           protein Y48A6B.3 protein.
          Length = 163

 Score = 32.7 bits (71), Expect = 0.10
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +1

Query: 130 LVHGLHEAAKALDKRQAVLCVLAENCDEAAYNKLVQALCNEHQIPLVKVDNN*KLG 297
           L  G+ +  K L + +  +C+LA N         +  +C E +IP V + +  +LG
Sbjct: 69  LREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLG 124


>AC084159-5|AAM69075.1|  199|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18b protein.
          Length = 199

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 10/61 (16%), Positives = 27/61 (44%)
 Frame = +2

Query: 164 WTRGKLSYVYWLRTVTRQPTTSLFRLSVMNIKSHLLRSITIRSSANGPVSVKSTKTARLG 343
           W + + S+ +W R   + P+  + +  V  + +H+     ++     P+  K  +   +G
Sbjct: 87  WPKNRHSFYFWARRPYKMPSKKVIKKKVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIG 146

Query: 344 K 346
           +
Sbjct: 147 Q 147


>AC084159-4|AAK39366.1|  234|Caenorhabditis elegans Hypothetical
           protein Y73B3A.18a protein.
          Length = 234

 Score = 32.3 bits (70), Expect = 0.13
 Identities = 10/61 (16%), Positives = 27/61 (44%)
 Frame = +2

Query: 164 WTRGKLSYVYWLRTVTRQPTTSLFRLSVMNIKSHLLRSITIRSSANGPVSVKSTKTARLG 343
           W + + S+ +W R   + P+  + +  V  + +H+     ++     P+  K  +   +G
Sbjct: 87  WPKNRHSFYFWARRPYKMPSKKVIKKKVAAVPAHIRAQTQVQKEVKNPLFEKRARNFNIG 146

Query: 344 K 346
           +
Sbjct: 147 Q 147


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 167  TRGKLSYVYWLRTVTRQPTTSLFRLSVMNIKSHLLRSITIRSSANGPVSV 316
            T G +  +   RTV    ++  F +++ N+KSHL  SI    SANG V +
Sbjct: 1300 TDGFIPPISDFRTVINTTSSGSFVVNLRNLKSHLALSI----SANGYVQI 1345


>AC024805-6|AAK39340.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.9 protein.
          Length = 448

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 124 GGLVHGLHEAAKALDKRQAVLCVLAENC 207
           GGLV G+  A KAL     V+ V++E C
Sbjct: 216 GGLVAGVATAVKALSPTTEVIGVVSETC 243


>AC006729-4|AAK84600.1|  265|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform a protein.
          Length = 265

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +1

Query: 136 HGLHEAAKALDKRQAVLCVLAENCDEAAYNKLVQALCNEHQIPLVKVDNN*KLG 297
           HG++   + ++ R+A L ++A + +       + ALC ++ +P   +     LG
Sbjct: 139 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 192


>AC006729-3|AAM15612.1|  245|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7A, isoform c protein.
          Length = 245

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/54 (22%), Positives = 27/54 (50%)
 Frame = +1

Query: 136 HGLHEAAKALDKRQAVLCVLAENCDEAAYNKLVQALCNEHQIPLVKVDNN*KLG 297
           HG++   + ++ R+A L ++A + +       + ALC ++ +P   +     LG
Sbjct: 119 HGVNTITRLVETRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLG 172


>U39741-3|AAA80430.1|  163|Caenorhabditis elegans Hypothetical
           protein F12D9.2 protein.
          Length = 163

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 76  DVNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAYNKLVQ 237
           D+NT++   LKT +  G L      A +AL KR   L +L    D  A  K+ Q
Sbjct: 54  DLNTSIINWLKTGIEEGDLEGAAQRAIEALRKRNEELKLL--EMDPNAMKKVEQ 105


>AF022973-11|AAK84524.3|  560|Caenorhabditis elegans Hypothetical
           protein F25G6.1 protein.
          Length = 560

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +1

Query: 52  PVLSGGAMDVNTALQEVLKTALIHGGLVHGLHEAAKAL 165
           PV +G    +     E+L+T +I    +HG  EAAKAL
Sbjct: 122 PVDNGKKKRLTAKECEILRTMVIPHRNIHGAMEAAKAL 159


>Z82062-4|CAB04888.1|  266|Caenorhabditis elegans Hypothetical
           protein W02A11.8 protein.
          Length = 266

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 307 GLCKID*DGEARKIVGCSCVVLKDFGEET 393
           G C I+ D    K VG +   L+DFGEET
Sbjct: 80  GKCTIEADITIIKEVGDARAKLRDFGEET 108


>Z81114-2|CAB03286.1|  604|Caenorhabditis elegans Hypothetical
           protein T04D3.2 protein.
          Length = 604

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +1

Query: 79  VNTALQEVLKTALIHGGLVHGLHEAAKALDKRQAVLCVLAENCDEAAY 222
           V  AL +   T LIH   +H L++  K L     V C+L ++  +A Y
Sbjct: 16  VVVALSDRQYTFLIHS-FIHSLYQHTKRLLFSDFVSCLLPKHLQQAMY 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,854,031
Number of Sequences: 27780
Number of extensions: 174521
Number of successful extensions: 458
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)