Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_B04
         (442 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC043343-1|AAH43343.1|  925|Homo sapiens nucleoporin 107kDa prot...    32   1.0  
BC017167-1|AAH17167.1|  686|Homo sapiens NUP107 protein protein.       32   1.0  
AJ295745-1|CAC03716.1|  925|Homo sapiens nuclear pore complex pr...    32   1.0  

>BC043343-1|AAH43343.1|  925|Homo sapiens nucleoporin 107kDa
           protein.
          Length = 925

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 29  LSCFSSSPYWPWLPQTEFTWWTIVVLLLRTRILSSLNHQTVLA 157
           L  FS +    WL Q E   W ++  L R RI S+L  ++V A
Sbjct: 199 LQKFSKTASMLWLLQQEMVTWRLLASLYRDRIQSALEEESVFA 241


>BC017167-1|AAH17167.1|  686|Homo sapiens NUP107 protein protein.
          Length = 686

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 29  LSCFSSSPYWPWLPQTEFTWWTIVVLLLRTRILSSLNHQTVLA 157
           L  FS +    WL Q E   W ++  L R RI S+L  ++V A
Sbjct: 48  LQKFSKTASMLWLLQQEMVTWRLLASLYRDRIQSALEEESVFA 90


>AJ295745-1|CAC03716.1|  925|Homo sapiens nuclear pore complex
           protein protein.
          Length = 925

 Score = 31.9 bits (69), Expect = 1.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = +2

Query: 29  LSCFSSSPYWPWLPQTEFTWWTIVVLLLRTRILSSLNHQTVLA 157
           L  FS +    WL Q E   W ++  L R RI S+L  ++V A
Sbjct: 199 LQKFSKTASMLWLLQQEMVTWRLLASLYRDRIQSALEEESVFA 241


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,152,812
Number of Sequences: 237096
Number of extensions: 1138261
Number of successful extensions: 2466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2466
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3602345922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)