Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_B02
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0915 + 28755584-28756139,28756695-28756846,28756994-287569... 31 0.63
10_01_0039 + 447573-448911,451247-451296,451322-451423 30 1.9
06_01_0968 + 7470284-7470427,7471555-7471821,7472145-7472537 29 3.3
02_05_0854 - 32267047-32267298,32267383-32268194,32268289-322684... 29 4.4
02_05_0853 + 32261705-32261794,32261895-32262027,32262117-322629... 29 4.4
01_03_0269 + 14442886-14442978,14443306-14443377,14443551-144440... 29 4.4
10_01_0037 + 434995-436299 28 5.9
09_06_0216 + 21627238-21627834 28 5.9
08_01_0422 + 3737429-3738006,3738083-3738824 28 5.9
08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195 28 7.7
06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835 28 7.7
03_02_0735 + 10811326-10812342,10813199-10813555,10813962-108142... 28 7.7
>03_05_0915 +
28755584-28756139,28756695-28756846,28756994-28756996,
28757587-28757690,28758033-28758121,28758682-28758825,
28759194-28759291,28759380-28759502,28760045-28760113,
28760206-28760406
Length = 512
Score = 31.5 bits (68), Expect = 0.63
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 256 FLRPQASDEGQYQCFAETPAGVASSRVIS 342
FLRP A+D Y CF GVAS ++I+
Sbjct: 274 FLRPNAADLSDYGCFVVLALGVASLQMIA 302
>10_01_0039 + 447573-448911,451247-451296,451322-451423
Length = 496
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = -3
Query: 435 RLHTVQLERPAFDWRFLVCLRWRCDEVSLPEADHPR 328
RL +L R D++ L WRC +LP A H R
Sbjct: 259 RLLPARLGRRCTDFQLLAATLWRCRTAALPYAPHRR 294
>06_01_0968 + 7470284-7470427,7471555-7471821,7472145-7472537
Length = 267
Score = 29.1 bits (62), Expect = 3.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Frame = +1
Query: 481 GADPNADVTDFDRRITAGP--DGNLYFTIVTKEDVRDIYQ 594
GA A VT F R P +GN+Y + T E+V +YQ
Sbjct: 40 GARTKALVTMFKERCEKEPQNEGNVYIAVTTPEEVIKLYQ 79
>02_05_0854 -
32267047-32267298,32267383-32268194,32268289-32268421,
32268530-32268619
Length = 428
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 436 NAYPKPLITWKKRLSGADPNADVTDFDRR--ITAGPDGNLY 552
NA+ + L+ W R+ GA+ NA DF + + +G L+
Sbjct: 246 NAHRQELVNWVDRVGGANSNATAFDFTTKGILNVAVEGELW 286
>02_05_0853 +
32261705-32261794,32261895-32262027,32262117-32262928,
32263020-32263271
Length = 428
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +1
Query: 436 NAYPKPLITWKKRLSGADPNADVTDFDRR--ITAGPDGNLY 552
NA+ + L+ W R+ GA+ NA DF + + +G L+
Sbjct: 246 NAHRQELVNWVDRVGGANSNATTFDFTTKGILNVAVEGELW 286
>01_03_0269 +
14442886-14442978,14443306-14443377,14443551-14444045,
14444134-14444253
Length = 259
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 436 NAYPKPLITWKKRLSGADPNADVTDF 513
NA+ + L+ W R+ GA+ NA DF
Sbjct: 123 NAHRQELVNWVNRVGGANSNATAFDF 148
>10_01_0037 + 434995-436299
Length = 434
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 435 RLHTVQLERPAFDWRFLVCLRWRCDEVSLPEADHPR 328
RL L R D++ L WRC +LP A H R
Sbjct: 258 RLLPAPLGRRCTDFQLLPAALWRCRTAALPYAPHRR 293
>09_06_0216 + 21627238-21627834
Length = 198
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 144 SHRRKRSGSQVLLAKGWEIFQLAG 215
SH RKR+ +Q +LAK ++F AG
Sbjct: 108 SHYRKRAAAQDVLAKAQDVFNQAG 131
>08_01_0422 + 3737429-3738006,3738083-3738824
Length = 439
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 178 SWQKDGKSFNWQEHNAALRKDEGSLVFLRPQASDEGQYQCF--AETP 312
SWQ G+ W++ A R+D V LR + +GQ C AETP
Sbjct: 282 SWQPWGRLEAWRDQGGAARQD---TVCLRLRLLPDGQDACMLVAETP 325
>08_01_0822 + 7976216-7978498,7978612-7978698,7979052-7979195
Length = 837
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/33 (27%), Positives = 18/33 (54%)
Frame = -1
Query: 218 CSCQLKDFPSFCQEYLTP*SFPSMRHSRTVGLF 120
C+C++ F ++C + + P + + HS LF
Sbjct: 390 CACEIAMFDTYCSKQMLPMRYGKIDHSSNTTLF 422
>06_01_1090 - 8945909-8946125,8946607-8947562,8947733-8949835
Length = 1091
Score = 27.9 bits (59), Expect = 7.7
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 245 PSSLRRAALCSCQLKDFPSFCQ 180
P SLRR ++ +C+ DFP++ Q
Sbjct: 911 PPSLRRLSIVNCRKLDFPAYLQ 932
>03_02_0735 +
10811326-10812342,10813199-10813555,10813962-10814225,
10814894-10815010,10815796-10815944,10816315-10816606,
10816681-10816845,10817106-10817357
Length = 870
Score = 27.9 bits (59), Expect = 7.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 31 LSACIIVGSALPVDKYPVLKD 93
L AC + G+ LP+D++ KD
Sbjct: 605 LGACALAGTGLPIDRFKTAKD 625
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,600,858
Number of Sequences: 37544
Number of extensions: 420705
Number of successful extensions: 1295
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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