Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A23
         (209 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   1.4  
SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyc...    25   1.8  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    23   4.2  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    23   4.2  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    23   7.3  
SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase Ogm2|Schizo...    23   7.3  
SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyce...    23   7.3  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    22   9.6  

>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
            Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 209  KSRLQVRRQHTCLRFSDIALAVIVAEDF 126
            K RLQ R  +   +FS + LAV+ A+ F
Sbjct: 1055 KKRLQKRLGYNDTQFSKVKLAVLQAQSF 1082


>SPBPB2B2.09c |||2-dehydropantoate 2-reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +1

Query: 121 KAKSSATMTARAISENLKHVCCLRTWS 201
           K K+S     R   EN+ H+CC  T S
Sbjct: 45  KDKNSTLKIDRLFEENVPHLCCQVTAS 71


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 105 ASPSSQSKVLCYYDSKSYIRESQARMLPTDLEPAL 209
           A+P+S+ +VL Y  S+++   S    LP+   P++
Sbjct: 556 ATPASRERVLPYTRSQAFHSTSLPPSLPSGHSPSI 590


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +3

Query: 93   TNHPASPSSQSKVLCYYDSKSYIRESQARML 185
            TN+   PSS   ++   DS  + +ES+ + L
Sbjct: 1063 TNNTLEPSSVEAIVSSKDSDKHAKESKGKSL 1093


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 112 LVAKAKSSATMTARAISENLKHVC 183
           L+ KAK S+++ A +I  +L  +C
Sbjct: 651 LLPKAKDSSSIVAASIVNSLGEIC 674


>SPAPB1E7.09 |ogm2|oma2|protein O-mannosyltransferase
           Ogm2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 739

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 32  FNNHEDLGRLRRAIGGSACGY 94
           F+ H  LG++  A+ G   GY
Sbjct: 103 FDVHPPLGKMLNAVAGKLVGY 123


>SPAC4G8.13c |prz1||transcription factor Prz1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 681

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = +3

Query: 102 PASPSSQSKVLCYYDSKSYIRESQARMLPT 191
           P SP++ S  +  YDS ++    Q  ++P+
Sbjct: 388 PISPTALSNSVLNYDSNNFSGTPQINVVPS 417


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/18 (61%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
 Frame = +2

Query: 56  RLRRA-IGGSACGYQPPS 106
           +LRR+ I GSA GY PP+
Sbjct: 115 KLRRSEINGSAEGYCPPA 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 706,969
Number of Sequences: 5004
Number of extensions: 8868
Number of successful extensions: 29
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 49
effective length of database: 2,117,282
effective search space used: 42345640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)