Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A21
         (356 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Sch...    27   1.1  
SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr...    25   2.6  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   6.1  
SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase |Schi...    24   6.1  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    24   6.1  
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch...    24   6.1  
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p...    24   8.0  
SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    24   8.0  

>SPAC24H6.10c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 368

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +2

Query: 35  LLSGGKTESLQDSDHIAGLQRRLEE 109
           +L GGK+ +  D+D +AG + +LEE
Sbjct: 246 ILRGGKSGTNFDADSVAGAKAKLEE 270


>SPAC16E8.14c |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 166 ENEKLVLGSHEDLMKGVSNFFQPALK 89
           EN  L + SH DL++ V NF   A K
Sbjct: 72  ENVLLKIASHVDLVEPVENFISTAKK 97


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -2

Query: 214  ISLSFKLMTVLN*KYLENEKLVLGSHEDLMKGVSNFFQPALKSSDV 77
            +S+SF ++T L+ K +  E  V  SH     G+ NF     K+ +V
Sbjct: 1482 VSISFSVLTNLDNKEVNLEDAVPASHRS-ASGIVNFDVEKGKTEEV 1526


>SPAP8A3.07c |||phospho-2-dehydro-3-deoxyheptonate aldolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +2

Query: 35  LLSGGKTESLQDSDHIAGLQRRLEE 109
           +L GGK     D++H+A +++ LE+
Sbjct: 244 ILRGGKKGPNYDAEHVAAVRKDLEK 268


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 175 KYLENEKLVLGSHEDLMKGVSNFFQPALKSSDVVG 71
           ++LEN+KL L SHE+  +       P  K    VG
Sbjct: 53  QFLENDKLDLNSHENEGEKTKTETVPTRKQFPKVG 87


>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 38  LSGGKTESLQDSDHIAGLQRRLEEVRYAFH*VLVGTQH*FLVFQI 172
           L G    S   S  I G Q RL+E+      +L+G+     ++QI
Sbjct: 526 LPGAALLSTSVSAEIVGFQSRLKEIIALLQKLLIGSSQCEAIYQI 570


>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 254

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 121 GVSNFFQPALKSSD 80
           G+S  FQP LK+SD
Sbjct: 92  GISKSFQPVLKTSD 105


>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 23.8 bits (49), Expect = 8.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 169 LENEKLVLGSHEDLMKGVSNFF 104
           L N+KL+   H   + G+SN F
Sbjct: 726 LRNDKLIKSIHPGSLSGISNSF 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,133,176
Number of Sequences: 5004
Number of extensions: 19558
Number of successful extensions: 62
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)