Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A21
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0216 - 14954047-14956098                                         33   0.087
05_03_0212 + 10260690-10261272,10261921-10262435,10262446-102625...    29   1.1  
11_04_0041 - 12690287-12690816,12691087-12691378                       27   3.3  
03_02_0423 + 8321076-8322164                                           27   5.7  

>11_04_0216 - 14954047-14956098
          Length = 683

 Score = 32.7 bits (71), Expect = 0.087
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -1

Query: 170 FGKRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVV 33
           FG      GF  G+ E+R+E  P  VE+++C    + +    +R++
Sbjct: 249 FGSSSDGDGFSDGVEEKRLECDPVSVEIKKCEPPAKSLSSVSRRIL 294


>05_03_0212 +
           10260690-10261272,10261921-10262435,10262446-10262569,
           10262840-10263042,10263169-10263240,10264905-10265007,
           10265350-10265582
          Length = 610

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -1

Query: 251 KKNDFLKTMVLNNFFKF*INDCFKLEIFGKRETSAGFPRGLNERRIELLPTGVEVQRCGR 72
           K+  F+ + V  +     + D FK  +        G PRG   ++++ L   +  + CG 
Sbjct: 425 KRTPFVDSQVRRSGRLLALRDGFKNILQEDPNMGVGKPRGKAVKKLKQLAEKIGSEMCGT 484

Query: 71  SLEEI 57
           SLEE+
Sbjct: 485 SLEEV 489


>11_04_0041 - 12690287-12690816,12691087-12691378
          Length = 273

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 64  SRLRPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPNIS 177
           SRLRP+R  S P  RS   + +S R  P+     P  S
Sbjct: 138 SRLRPNRCLSEPFRRSGTLVFMSGREEPSFAEPEPEPS 175


>03_02_0423 + 8321076-8322164
          Length = 362

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +1

Query: 1   PPLTPMSLIVMTTLWGEN*ISSRLRPHRWTSTPVGRSSIRLSLSP 135
           PP + ++L    T W  +  +   R H W +   GR + RL   P
Sbjct: 247 PPGSALTLSTSDTYWRMSLPAGATRDHPWCNPVTGRGAPRLDSLP 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,848,442
Number of Sequences: 37544
Number of extensions: 112080
Number of successful extensions: 308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 307
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)