Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A21
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    23   0.82 
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   0.82 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   4.4  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   5.8  

>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 83  RCGRSLEEIQFSP 45
           RCGRSLE   F+P
Sbjct: 109 RCGRSLEGYPFNP 121


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -1

Query: 83  RCGRSLEEIQFSP 45
           RCGRSLE   F+P
Sbjct: 125 RCGRSLEGYPFNP 137


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 139 HEDLMKGVSNFFQPALKSSDVVGV 68
           ++DL+   +   +P + +SDV+ V
Sbjct: 33  YDDLLSNYNKLVRPVVNTSDVLRV 56


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = -2

Query: 139 HEDLMKGVSNFFQPALKSSDVVGV 68
           ++DL+   +   +P + +SDV+ V
Sbjct: 33  YDDLLSNYNKLVRPVVNTSDVLRV 56


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 109 SSIRLSLSPRGNPALVSRFP 168
           +S++L+  PR NP   S+ P
Sbjct: 46  ASLKLAFEPRRNPGPGSKGP 65


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,435
Number of Sequences: 438
Number of extensions: 1190
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)