Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A19
         (366 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces...    28   0.39 
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos...    26   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   2.8  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    25   3.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   4.9  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    24   6.4  
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S...    24   6.4  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    24   6.4  
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    24   8.5  

>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 576

 Score = 28.3 bits (60), Expect = 0.39
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +1

Query: 121 VPSDGNSDHVVIANPDPFFSQPSNGPSGNYEPI 219
           V  DG +  VVI  P   F+ P+N  S N+ P+
Sbjct: 405 VTGDGEAKQVVITMPSTHFT-PANNSSANHSPL 436


>SPAC926.09c |fas1||fatty acid synthase beta subunit
            Fas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2073

 Score = 25.8 bits (54), Expect = 2.1
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
 Frame = +1

Query: 172  FFSQPSNGP----SGNYEPISTGPAFVDF 246
            F + P+N P    SG+Y PI   P F  F
Sbjct: 1560 FVTPPTNSPYAEVSGDYNPIHVSPTFAAF 1588


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 2.8
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 178 SQPSNGPSGNYEPISTGPAFVDFNHPNYPP 267
           S P N P     P+S  PA    + P  PP
Sbjct: 265 SSPPNSPPRPIAPVSMNPAINSTSKPPLPP 294


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +1

Query: 145 HVVIANPDPFFSQPSNGPSGNY-EPISTGPAF-VDFNHPNYPP*RYDXP 285
           HV ++NPD     P +  S NY  P+    A   +F+ P +   +Y  P
Sbjct: 478 HVSLSNPDFAIGSPMSQDSSNYSSPLHRRKASDSNFSDPRFDDLKYLSP 526


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +1

Query: 112 PGQVPSDGNSDHVVIANPDPFFSQPSNGPSGNYE 213
           P   P+D NS +V    P  +   P+  P  +YE
Sbjct: 840 PSPPPADFNSLNVDFYEPHSYLESPAPEPQPSYE 873


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = +1

Query: 127  SDGNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAF 237
            SD   DH V  +  P F   S+ P  + E  S  P F
Sbjct: 1443 SDVEDDHDVAKSTAPDFETSSHRPERSSEKKSPSPVF 1479


>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
           Pac1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 9/34 (26%), Positives = 14/34 (41%)
 Frame = +1

Query: 166 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 267
           +P   +PS+ P       +  P   +F    YPP
Sbjct: 99  EPVIEEPSSHPKNQKNQENNEPTSEEFEEGEYPP 132


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +3

Query: 147 RCYCEPGSFLLSTIKRS*RKL*THKHWTGVRR 242
           +C  EP S   STI+          HW G+R+
Sbjct: 444 KCLTEPTSRFQSTIEIQKHPFFKRLHWNGLRK 475


>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 262

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 124 PSDGNSDHVVIANPDPFFSQPSNGP 198
           P+ GN D+   +   P +SQPS  P
Sbjct: 85  PAVGNQDYSKPSYSQPSYSQPSQPP 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,856
Number of Sequences: 5004
Number of extensions: 27027
Number of successful extensions: 67
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)