Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A19
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   3.4  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    20   8.0  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   8.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   8.0  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 44  SSPYWPWLPQTECTWSIITLIIIQA 118
           S+P W + P    TW  I ++++ A
Sbjct: 549 SAPVWRFQPWGPFTWGGIGVVVLFA 573


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 10/44 (22%), Positives = 17/44 (38%)
 Frame = +1

Query: 133 GNSDHVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYP 264
           GN+  + I  P P   +         EP +  P ++    P +P
Sbjct: 71  GNNRPIYIPQPRPPHPRLRREAESEAEPGNNRPVYIPQPRPPHP 114


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 138 IAVRWNLAWIIIRVMIDHVHSVCGS 64
           I + W L ++++ + ID     CG+
Sbjct: 117 IILAWALFYLLVSLRIDLPWRTCGN 141


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -1

Query: 138 IAVRWNLAWIIIRVMIDHVHSVCGS 64
           I + W L ++++ + ID     CG+
Sbjct: 170 IILAWALFYLLVSLRIDLPWRTCGN 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,809
Number of Sequences: 438
Number of extensions: 2285
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)