Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A18
         (528 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0646 + 4853546-4853623,4853732-4855357,4855467-4855751,485...    27   7.1  
02_05_0157 - 26353971-26354336,26354645-26354726,26354838-263549...    27   7.1  
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    27   9.3  
02_05_0874 - 32377906-32378131,32378269-32378384,32378516-323789...    27   9.3  

>07_01_0646 +
           4853546-4853623,4853732-4855357,4855467-4855751,
           4856131-4856277
          Length = 711

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 18/58 (31%), Positives = 26/58 (44%)
 Frame = +1

Query: 148 AGALTINSDGTSGAMVKVPITGNENHKLSALGSVDLTNQMKLGAATAGLAYDNVNGHG 321
           AG  + +     G  V   + G +NH +S +G          GA TAG AY+ +N  G
Sbjct: 178 AGHSSTSISAALGMAVARDLLGKKNHVISVIGD---------GAMTAGQAYEAMNNSG 226


>02_05_0157 -
           26353971-26354336,26354645-26354726,26354838-26354933,
           26355365-26356068
          Length = 415

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -3

Query: 502 TCSPIRHRQC*SSELEEYLACF*WRMLW 419
           TCSPI +    + +LEE++  F  R LW
Sbjct: 339 TCSPIANGGIGALDLEEFICAFHVRWLW 366


>03_05_0725 + 27155736-27155746,27155798-27155949,27156108-27158068,
            27159169-27159397,27159506-27159634,27159725-27159838,
            27160059-27160258,27160301-27160599,27160713-27160923,
            27161017-27161172,27161290-27161447,27161532-27161724,
            27162015-27162406,27162537-27162717,27162802-27163031,
            27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 45   GRRHSRYCLLKSWLLHRT 98
            GRRHSR CLL S  L +T
Sbjct: 1133 GRRHSRRCLLMSLALAKT 1150


>02_05_0874 -
           32377906-32378131,32378269-32378384,32378516-32378921,
           32379023-32379139,32379229-32379291,32380183-32380373
          Length = 372

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = -2

Query: 287 AVAAPNFIWLVRSTEPRALSLWFSLPVMGTLTIAPEVPSEL 165
           AV AP  +W  R   PR L+L   L +MG   + P +   L
Sbjct: 53  AVMAPFALWFERRVRPR-LTLIIFLKIMGLAILEPVLDQNL 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,690,461
Number of Sequences: 37544
Number of extensions: 306019
Number of successful extensions: 693
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 683
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1166441080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)