Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A18
         (528 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    34   0.055
U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical pr...    28   3.6  
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr...    28   4.8  
AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U41995-11|AAA83467.1|  665|Caenorhabditis elegans Hypothetical p...    27   8.3  
AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical ...    27   8.3  

>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 34.3 bits (75), Expect = 0.055
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -1

Query: 186 TGGTIRVDSESTRLPAHPRVSPLLRLILILFDVVTSSSTSSNGCDADQENRH 31
           TGG  + DS  T LP H  +S L+ LI +++  + +SS +S G        H
Sbjct: 301 TGGVTKDDSFVTPLPVHSLISLLIWLICLVYASIRNSSNTSLGKITGDNEEH 352


>U55376-1|AAA98003.1|  434|Caenorhabditis elegans Hypothetical
           protein F16H11.3 protein.
          Length = 434

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 245 EPRALSLWFSLPVMGTLTIAPEVPSELI 162
           +P  +  W+S   MG+LTIA ++P+  I
Sbjct: 57  KPDGVETWYSKEFMGSLTIASQLPNASI 84


>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical protein
            B0416.1 protein.
          Length = 1203

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -1

Query: 231  ELVVFIASYGYLDHSTGGTIRVDSESTRLPAHPRVSPLLRLILIL 97
            + V  + S   +DHSTG     DSEST     P++S   R ++ +
Sbjct: 876  QFVPSLGSVSEVDHSTGEEQSSDSESTTSSLPPKLSLRQRFLVCI 920


>AF016425-1|AAD34668.1|  458|Caenorhabditis elegans Hypothetical
           protein F59A7.1 protein.
          Length = 458

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 4/27 (14%)
 Frame = +1

Query: 337 THIP----GFGDKMTAAGKVNLFHNNN 405
           +H+P    GFGDK T +  +  F+NNN
Sbjct: 237 SHLPDPRLGFGDKTTGSDSLQKFYNNN 263


>Z49132-7|CAA88986.1|  403|Caenorhabditis elegans Hypothetical
           protein ZK666.7 protein.
          Length = 403

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +1

Query: 253 LTNQMKLGAATAGLAY--DNVNGHGATLTKTHIPGF 354
           L  +MK+  A A +AY  DNVNG    L++   PG+
Sbjct: 180 LATRMKVDVAIATVAYGQDNVNGFLRQLSQIATPGY 215


>U41995-11|AAA83467.1|  665|Caenorhabditis elegans Hypothetical
           protein E02C12.10 protein.
          Length = 665

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 18/38 (47%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +1

Query: 349 GFG-DKMTAAGKVNL-FHNNNHDFSAKAFATKNMPNIP 456
           GFG DK+   GK    FHN   D S K     N PNIP
Sbjct: 514 GFGEDKLKRLGKTTREFHNREVD-SYKLLMRYNHPNIP 550


>AC024856-1|ABB51172.1|  334|Caenorhabditis elegans Hypothetical
           protein Y71G10AR.4 protein.
          Length = 334

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/27 (37%), Positives = 20/27 (74%)
 Frame = -2

Query: 266 IWLVRSTEPRALSLWFSLPVMGTLTIA 186
           +W+VRS E R L+++F + V+  +++A
Sbjct: 169 VWVVRSKESRRLTVYFVISVVVLISMA 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,311,265
Number of Sequences: 27780
Number of extensions: 253009
Number of successful extensions: 623
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)