Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A17
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    27   1.5  
SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces pombe...    25   4.5  
SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual    25   5.9  
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p...    25   5.9  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    25   7.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.8  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    25   7.8  

>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 373 TQSIINNTERDVFDIYSDSKRAPKNPMNDK-LNLLISQRDSLIQCENPDEELVQQLN 206
           T  I   +ERD   ++ + +   K PM DK LN     +   +  +NPDE     LN
Sbjct: 335 TLQIPGYSERDFEKLFREFQILRKQPMQDKLLNFKKLCKSKTVDPKNPDEFTESILN 391


>SPCC1672.01 |||histidinol-phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -2

Query: 337 FDIYSDSKRAPKNPMNDKLNLLISQRDSLIQCENPDEELVQQLN 206
           FD Y +  R  K    D++N+LI      I+ E+   EL++ LN
Sbjct: 65  FDEYVNEARRLKQNYGDQINILIGAETEYIRPES--VELLKSLN 106


>SPAC12G12.13c |cid14||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 684

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 375 SKAGVFANRSTLKSSFDLLTSAMYWFVS 458
           S  G+   ++T  + FDLLTS +Y   S
Sbjct: 497 SSRGLLRVKATFANGFDLLTSKLYALAS 524


>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = +3

Query: 237 FSHCMSESRCEINKFSLSFIGFFGARLESLYISKTSRSVLFIIDCVS 377
           F+ C S S C + K    F+ + G  ++SL  +  +R  LF + C++
Sbjct: 145 FALCSSSSPCSVAKAFTLFLEYLGKLMQSL--NPLTR--LFAVQCLN 187


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1147

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 21/83 (25%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
 Frame = -2

Query: 472  DEEKTDTNQYMADVN---KSKDDFNVDLLANTPALETQSIINNTERDVFDIYSDSKRAPK 302
            +++ TD ++++ +++   KS++D +++    TP  E QSI ++  ++V ++ S  K    
Sbjct: 1034 EKKFTDYHKFLENISDKLKSEEDTSLE----TPIHENQSIQSDQIKEVGEVLSAIK---- 1085

Query: 301  NPMNDKLNLLISQRDSLIQCENP 233
              ++D + LL +Q D L + + P
Sbjct: 1086 -SLSDSVMLLKNQIDDLAKEKLP 1107


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -2

Query: 436 DVNKSKDDF----NVDLLANTPALETQSIINNTERDVFDIYSDSKRAPKNPMND 287
           DV  S D F    N+  L  T  +    I+ N  ++  D  SDSK   K P N+
Sbjct: 726 DVLLSADAFTPRQNIKKLVITHKISKDDILQNGVKNGNDAKSDSKVQEKAPQNE 779


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = -2

Query: 388 TPALETQSIINNTERDVFDIYSDSK 314
           TP  + + +I+  ++DVFD+ +D++
Sbjct: 313 TPIKDERELIDPDQKDVFDLVNDNQ 337


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,766
Number of Sequences: 5004
Number of extensions: 31551
Number of successful extensions: 98
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)