Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A17
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_1033 + 21861826-21863046,21863153-21863380,21863474-218637...    36   0.013
10_08_0819 - 20803992-20804493,20804578-20804759,20804849-208049...    33   0.12 
05_06_0270 - 26830231-26830394,26830489-26830681,26830853-268310...    30   1.1  
10_08_0558 + 18756797-18756887,18757189-18757262,18759881-187600...    28   3.3  
04_04_0322 - 24374624-24377698                                         28   3.3  
08_02_0650 - 19708479-19710507,19711033-19711889                       28   4.4  
10_06_0054 - 10122703-10122983,10123549-10125376                       27   5.8  

>04_03_1033 +
           21861826-21863046,21863153-21863380,21863474-21863704,
           21863808-21864070,21864189-21864660
          Length = 804

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
 Frame = -2

Query: 376 ETQSIINNT-ERDVFDIYSDSKRAPKNPMNDKLNLLISQRDSLIQCENPD--EELVQQLN 206
           E Q+ + +T E+  +D+ +DS +  K      +NL+   RDSL +  + +  EE+++ ++
Sbjct: 342 EFQAKVKSTMEKAFWDLVTDSMKGDKPDYTQLINLVKEVRDSLHELASKELKEEILENID 401

Query: 205 QEIRSMLLNCGS 170
            EI S +L  GS
Sbjct: 402 LEILSQVLESGS 413


>10_08_0819 -
           20803992-20804493,20804578-20804759,20804849-20804911,
           20805736-20805846,20806668-20806721,20807040-20807075,
           20807356-20807400,20807473-20807562,20807863-20808195
          Length = 471

 Score = 33.1 bits (72), Expect = 0.12
 Identities = 18/71 (25%), Positives = 38/71 (53%)
 Frame = -2

Query: 343 DVFDIYSDSKRAPKNPMNDKLNLLISQRDSLIQCENPDEELVQQLNQEIRSMLLNCGS*Y 164
           ++ ++Y+     P N +  ++  L  + +SL   E  ++ELVQ++N+  R ++L      
Sbjct: 123 NIINLYAPEISVPNNDLEKQVLSLREKNESL---EKQNQELVQEINEHKRQIILQQNFIN 179

Query: 163 YRALQLDNDFF 131
             +L+  N+FF
Sbjct: 180 ESSLKRKNEFF 190


>05_06_0270 -
           26830231-26830394,26830489-26830681,26830853-26831069,
           26831864-26831990,26831998-26832121
          Length = 274

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/92 (23%), Positives = 41/92 (44%)
 Frame = -2

Query: 460 TDTNQYMADVNKSKDDFNVDLLANTPALETQSIINNTERDVFDIYSDSKRAPKNPMNDKL 281
           T T     + N+  +++++D     P L T + I+    D+     DS R P + ++ + 
Sbjct: 28  TTTMDCGGNPNRITENYSIDR-GTGPVLATPADISGAATDISHKDQDSGRLPSSHLHRQS 86

Query: 280 NLLISQRDSLIQCENPDEELVQQLNQEIRSML 185
               +        E  DEE+VQ  N+E+ S +
Sbjct: 87  ESWATHGSDK---EKEDEEVVQAKNEEVDSFI 115


>10_08_0558 +
           18756797-18756887,18757189-18757262,18759881-18760069,
           18760190-18760309,18760457-18760521,18760684-18760828,
           18761304-18763337,18763904-18764025,18764127-18764309,
           18764635-18764690,18765086-18765141
          Length = 1044

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/60 (26%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
 Frame = -2

Query: 355 NTERDVFDIYSDSKRAPKNP----MNDKLNLLISQRDSLIQCENPDEELVQQLNQEIRSM 188
           N ++D+F    D++ A  N     + D++   + + ++L   +N  EE++++L  EIRS+
Sbjct: 800 NCQKDMFLQDRDAEIALLNKELASIKDQVQTYLEEINTLKSSKNEKEEMIEKLQSEIRSL 859


>04_04_0322 - 24374624-24377698
          Length = 1024

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = +3

Query: 261 RCEINKFSLSFIGFFG--ARLESLYISKTSRSVLFIIDCVSKAG 386
           RC I  FS SFI   G    +ES      +     +IDC SKAG
Sbjct: 827 RCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAG 870


>08_02_0650 - 19708479-19710507,19711033-19711889
          Length = 961

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 13/57 (22%), Positives = 31/57 (54%)
 Frame = -2

Query: 379 LETQSIINNTERDVFDIYSDSKRAPKNPMNDKLNLLISQRDSLIQCENPDEELVQQL 209
           L+ ++++ N  R  +++ + +  +    ++ +L  L  + D L+  E P +ELV+ L
Sbjct: 124 LKDRAVLVNDRRKRYELDAAASSSAAIAIDSRLPALFEEMDRLVGIEGPRDELVEFL 180


>10_06_0054 - 10122703-10122983,10123549-10125376
          Length = 702

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 222 NSSSGFSHCMSESRCEINKFSLSFIGFFGARLESLYISKTSRSVLFIIDCVS 377
           +S +    CM  + C I  F L F  +   R   +++S+ S     I+DC S
Sbjct: 57  SSPTNRKKCMRAAGCAIALFLLVFFIYASLRYFHVFLSEGSPEYYVILDCGS 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,662,751
Number of Sequences: 37544
Number of extensions: 159070
Number of successful extensions: 356
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)