Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A16
         (137 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208980-1|BAD92217.1|  303|Homo sapiens ribosomal protein L5 va...    64   8e-11
U14966-1|AAA85654.1|  297|Homo sapiens ribosomal protein L5 prot...    62   4e-10
BC132972-1|AAI32973.1|  297|Homo sapiens ribosomal protein L5 pr...    62   4e-10
BC132970-1|AAI32971.1|  297|Homo sapiens ribosomal protein L5 pr...    62   4e-10
BC109370-1|AAI09371.1|  297|Homo sapiens ribosomal protein L5 pr...    62   4e-10
BC001882-1|AAH01882.1|  101|Homo sapiens RPL5 protein protein.         62   4e-10
AL162740-1|CAI22505.1|  297|Homo sapiens ribosomal protein L5 pr...    62   4e-10
AK222604-1|BAD96324.1|  297|Homo sapiens ribosomal protein L5 va...    62   4e-10

>AB208980-1|BAD92217.1|  303|Homo sapiens ribosomal protein L5
           variant protein.
          Length = 303

 Score = 64.1 bits (149), Expect = 8e-11
 Identities = 28/33 (84%), Positives = 31/33 (93%)
 Frame = +2

Query: 38  IF*KMGFVKVVKNKQYFKRYQVKFKRRREGKTD 136
           +F +MGFVKVVKNK YFKRYQVKF+RRREGKTD
Sbjct: 4   LFRRMGFVKVVKNKAYFKRYQVKFRRRREGKTD 36


>U14966-1|AAA85654.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +2

Query: 50  MGFVKVVKNKQYFKRYQVKFKRRREGKTD 136
           MGFVKVVKNK YFKRYQVKF+RRREGKTD
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTD 29


>BC132972-1|AAI32973.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +2

Query: 50  MGFVKVVKNKQYFKRYQVKFKRRREGKTD 136
           MGFVKVVKNK YFKRYQVKF+RRREGKTD
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTD 29


>BC132970-1|AAI32971.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +2

Query: 50  MGFVKVVKNKQYFKRYQVKFKRRREGKTD 136
           MGFVKVVKNK YFKRYQVKF+RRREGKTD
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTD 29


>BC109370-1|AAI09371.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +2

Query: 50  MGFVKVVKNKQYFKRYQVKFKRRREGKTD 136
           MGFVKVVKNK YFKRYQVKF+RRREGKTD
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTD 29


>BC001882-1|AAH01882.1|  101|Homo sapiens RPL5 protein protein.
          Length = 101

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +2

Query: 50  MGFVKVVKNKQYFKRYQVKFKRRREGKTD 136
           MGFVKVVKNK YFKRYQVKF+RRREGKTD
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTD 29


>AL162740-1|CAI22505.1|  297|Homo sapiens ribosomal protein L5
           protein.
          Length = 297

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +2

Query: 50  MGFVKVVKNKQYFKRYQVKFKRRREGKTD 136
           MGFVKVVKNK YFKRYQVKF+RRREGKTD
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTD 29


>AK222604-1|BAD96324.1|  297|Homo sapiens ribosomal protein L5
           variant protein.
          Length = 297

 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 27/29 (93%), Positives = 28/29 (96%)
 Frame = +2

Query: 50  MGFVKVVKNKQYFKRYQVKFKRRREGKTD 136
           MGFVKVVKNK YFKRYQVKF+RRREGKTD
Sbjct: 1   MGFVKVVKNKAYFKRYQVKFRRRREGKTD 29


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,197,161
Number of Sequences: 237096
Number of extensions: 194773
Number of successful extensions: 379
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 76,859,062
effective HSP length: 26
effective length of database: 70,694,566
effective search space used: 1343196754
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)