Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A16
         (137 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical pr...    56   3e-09
AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical ...    26   3.2  
U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myos...    25   7.4  
U41025-2|AAM51507.2|  356|Caenorhabditis elegans Hypothetical pr...    25   9.7  
U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z49967-5|CAA90251.1|  293|Caenorhabditis elegans Hypothetical
           protein F54C9.5 protein.
          Length = 293

 Score = 56.4 bits (130), Expect = 3e-09
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = +2

Query: 50  MGFVKVVKNKQYFKRYQVKFKRRREGKTD 136
           MG VKV+KNK YFKRYQVK +RRREGKTD
Sbjct: 1   MGLVKVIKNKAYFKRYQVKLRRRREGKTD 29


>AL132951-9|CAC44304.3|  553|Caenorhabditis elegans Hypothetical
           protein Y67H2A.2a protein.
          Length = 553

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 29  ISGIF*KMGFVKVVKNKQYFKRYQVKFKRRRE 124
           I  IF K+G V+  K +Q  +R+Q+KF  R +
Sbjct: 405 IYSIFYKLGKVEE-KERQIIERFQIKFHERED 435


>U41990-2|AAA83339.2| 1963|Caenorhabditis elegans Non-muscle myosin
            protein 1 protein.
          Length = 1963

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 71   KNKQYFKRYQVKFKRRREGKTD 136
            KN+Q  K YQ++ +  R+ K D
Sbjct: 1646 KNQQIIKEYQIECEEARQAKED 1667


>U41025-2|AAM51507.2|  356|Caenorhabditis elegans Hypothetical
           protein C01C4.3a protein.
          Length = 356

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 47  KMGFVKVVKNKQYFKRYQVKFKRRREGK 130
           + GF+K+ ++KQ  +R  +KF  R + K
Sbjct: 23  RFGFIKLAEHKQSKQRIAIKFFPRPQTK 50


>U41025-1|AAM51508.1|  407|Caenorhabditis elegans Hypothetical
           protein C01C4.3b protein.
          Length = 407

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 47  KMGFVKVVKNKQYFKRYQVKFKRRREGK 130
           + GF+K+ ++KQ  +R  +KF  R + K
Sbjct: 136 RFGFIKLAEHKQSKQRIAIKFFPRPQTK 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,287
Number of Sequences: 27780
Number of extensions: 31372
Number of successful extensions: 66
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 12,740,198
effective HSP length: 26
effective length of database: 12,017,918
effective search space used: 228340442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)