Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A14
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    27   2.7  
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.1  

>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 231 IRFESTGYHLPSSLYNKMFII 293
           IRF + GYHL S L N   +I
Sbjct: 30  IRFSTNGYHLASGLVNGSVVI 50


>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 227

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 36  DHYLNNNKR*PEDDYNAFSLSNVPKTL 116
           D+YL+  +   EDDYN +  S+  KTL
Sbjct: 9   DNYLDRLRTVEEDDYNDWEGSSDTKTL 35


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,278,036
Number of Sequences: 5004
Number of extensions: 47106
Number of successful extensions: 102
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)