Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A14
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0310 + 2714773-2715309,2716426-2716650                           28   6.3  
07_03_0093 + 13330867-13332312                                         28   6.3  

>08_01_0310 + 2714773-2715309,2716426-2716650
          Length = 253

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 479 RYVYNYRTVTNRLSRYRPSLNKPNNKPTP 565
           R V  Y    NRL+RY P   +P  KP P
Sbjct: 160 RTVTEYLHEFNRLARYAPEDTEPQTKPYP 188


>07_03_0093 + 13330867-13332312
          Length = 481

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/51 (23%), Positives = 28/51 (54%)
 Frame = +1

Query: 100 MFPKHSPIGAR*EIVTWTVEPNATAVQLISSQSLSLPKARAFVE*DSNQRD 252
           ++P  +P  AR E+++W   P+AT + + ++ +  +     F   +S +R+
Sbjct: 187 LYPDDAPATAR-EVLSWPGSPSATVLSMAATSATEVSSPWLFTSFESARRN 236


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,087,927
Number of Sequences: 37544
Number of extensions: 245597
Number of successful extensions: 421
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)