Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A14
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL117195-27|CAE18006.1|  243|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical
           protein F55C10.4 protein.
          Length = 517

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 18  CIGFHFDHYLNNNKR*PED-DYNAFSLSNVPKTLPDRCSVRNCNLDCGAKRYRRTIDFIT 194
           C    F H  + N+  P+    NA+S  ++P+ + +RC   +     G   +  +  F T
Sbjct: 447 CYNESFYHLRDTNQMRPDILCVNAYSC-DLPQQVGNRCVHSDATYHSGPPMWPISFHFAT 505

Query: 195 KSFFTESSG 221
            SFF+   G
Sbjct: 506 NSFFSRDIG 514


>AL117195-27|CAE18006.1|  243|Caenorhabditis elegans Hypothetical
           protein Y57A10A.35 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -2

Query: 431 YPIY*YISNYN---VSSTVVYIFSTL*VLVCFHSTYIWVFVA 315
           YP+Y + SN +   V+STV YIFS L     F   Y+ VF +
Sbjct: 180 YPLYGFTSNISLLLVTSTVSYIFSPL-TTPSFLLLYLNVFAS 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,271,979
Number of Sequences: 27780
Number of extensions: 252810
Number of successful extensions: 511
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)