Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A12
         (152 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1...    26   0.77 
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    25   1.0  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    23   4.1  
SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces p...    23   5.5  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    23   7.2  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    23   7.2  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    22   9.5  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    22   9.5  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    22   9.5  

>SPAC11G7.05c |||[acyl-carrier protein] S-malonyltransferase Mct1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 0.77
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = +3

Query: 69  HAAGEFSVLYSPESLSFSGSHKVLES 146
           H+ GE+S   + ++LSFS + K++++
Sbjct: 90  HSLGEYSAFVASQTLSFSSALKLVQA 115


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 42  SLVLSVIGTHAAGEFSVLYSPESLSFSGSHKVLESHL 152
           ++V+S+  T     F +LY PES+  S S K+ ++ L
Sbjct: 159 NIVMSIKATKFP-HFGILYHPESVGSSKSLKIFKNFL 194


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -1

Query: 101 AVKYAEFASSMGSNYRQNKRKPEGNHGHS 15
           A + A+   + GS +R   ++  GN+GH+
Sbjct: 80  AKQQAQQRENRGSRFRGRGQRGRGNYGHT 108


>SPAC1F8.01 |ght3||hexose transporter Ght3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 555

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 9/35 (25%)
 Frame = +2

Query: 8   QNGC-DH--GS-LLVFSC-----FVCNWNPCCWRI 85
           +NG  DH  GS ++VFSC     + C+W P  W I
Sbjct: 356 KNGTSDHRAGSVMIVFSCLFLFSYCCSWGPMGWVI 390


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 142 SKTLCDPEKLKDSGL*STLNSP 77
           SKT+  P+  K+    +TLNSP
Sbjct: 372 SKTIAKPKPAKELSPQATLNSP 393


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 5/23 (21%)
 Frame = +2

Query: 32  LLVFSC-----FVCNWNPCCWRI 85
           ++VFSC     + C+W P  W I
Sbjct: 368 MIVFSCLFLFSYCCSWGPMGWVI 390


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 112 KDSGL*STLNSPAAWVP 62
           KDSG   TLN  AA +P
Sbjct: 402 KDSGFVHTLNGTAAAIP 418


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = +3

Query: 27  VPFWFSLVLSVIGTHAAGEFSVLYSPESLSFSGSH 131
           VP W  ++  ++G        +L     L F G H
Sbjct: 213 VPSWIKVITKILGAAVVTSIVLLLEKIFLHFIGFH 247


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 17  CDHGSLLVFSCFVCNWNP 70
           C HG L+    +VCN +P
Sbjct: 131 CHHGLLMNSEVWVCNVDP 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 660,301
Number of Sequences: 5004
Number of extensions: 8615
Number of successful extensions: 34
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)