Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A12
         (152 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    25   0.11 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    19   5.6  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   7.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   7.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    18   9.9  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          18   9.9  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 24.6 bits (51), Expect = 0.11
 Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +3

Query: 27  VPFWFSLVLSVIGTHAAGEFSVL-YSPESLSFSG 125
           VP+W S   S +  + AG F +L  S   LS  G
Sbjct: 346 VPYWISTTTSFVLNNRAGRFLILTESDTKLSSQG 379


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 124 PEKLKDSGL*STLNSPAAWVP 62
           P+K  DSG+ S     A  VP
Sbjct: 152 PDKYMDSGIFSRAREEANVVP 172


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 4/4 (100%), Positives = 4/4 (100%)
 Frame = +2

Query: 68  PCCW 79
           PCCW
Sbjct: 487 PCCW 490



 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/12 (41%), Positives = 6/12 (50%)
 Frame = +2

Query: 50  FVCNWNPCCWRI 85
           + C W   CW I
Sbjct: 486 YPCCWWKICWTI 497


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.6 bits (36), Expect = 7.5
 Identities = 4/4 (100%), Positives = 4/4 (100%)
 Frame = +2

Query: 68  PCCW 79
           PCCW
Sbjct: 540 PCCW 543



 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/12 (41%), Positives = 6/12 (50%)
 Frame = +2

Query: 50  FVCNWNPCCWRI 85
           + C W   CW I
Sbjct: 539 YPCCWWKICWTI 550


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 5/10 (50%), Positives = 8/10 (80%)
 Frame = +2

Query: 74  CWRIQRTLQP 103
           CW+ +RT +P
Sbjct: 874 CWQKERTHRP 883


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 18.2 bits (35), Expect = 9.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 95  KYAEFASSMGSNYRQNKR 42
           KYA  ++S+GS  R  +R
Sbjct: 209 KYAISSNSLGSRSRSFQR 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,480
Number of Sequences: 438
Number of extensions: 476
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 30
effective length of database: 133,203
effective search space used:  2664060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)