Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_A11
(501 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces po... 173 9e-45
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 170 9e-44
SPAC664.08c |||traub transciption factor family protein |Schizos... 27 2.1
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar... 26 2.8
SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein Rpp1-2|S... 26 3.7
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe... 26 3.7
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 4.8
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 25 6.4
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 25 8.4
>SPAC8E11.02c |rad24||14-3-3 protein Rad24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 173 bits (422), Expect = 9e-45
Identities = 84/110 (76%), Positives = 93/110 (84%)
Frame = +1
Query: 1 AEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRAC 180
AEFA G R+ +A+ SL YKAAS+IA EL PTHPIRLGLALNFSVFYYEILNSPDRAC
Sbjct: 135 AEFAVGEKRQHSADQSLEGYKAASEIATAELAPTHPIRLGLALNFSVFYYEILNSPDRAC 194
Query: 181 RLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESA 330
LAK AFD+AI+ELD+LSEESYKDSTLIMQLLRDNLTLWTSD + +A
Sbjct: 195 YLAKQAFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAEYSAAAA 244
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 170 bits (414), Expect = 9e-44
Identities = 86/124 (69%), Positives = 101/124 (81%)
Frame = +1
Query: 1 AEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRAC 180
AEF G KEAA++SL AYKAASDIA+ ELPPT P+RLGLALNFSVFYYEIL+SP+ AC
Sbjct: 134 AEFTVGEVCKEAADSSLEAYKAASDIAVAELPPTDPMRLGLALNFSVFYYEILDSPESAC 193
Query: 181 RLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESAETEQKEQAQD 360
LAK FD+AI+ELD+LSEESYKDSTLIMQLLRDNLTLWTSD + + +SA+ E A
Sbjct: 194 HLAKQVFDEAISELDSLSEESYKDSTLIMQLLRDNLTLWTSDAEYN-QSAKEEAPAAAAA 252
Query: 361 VEDQ 372
E++
Sbjct: 253 SENE 256
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 26.6 bits (56), Expect = 2.1
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 226 TLSEESYKDSTLIMQLLRDNLTLWTSDMQGDGESAETEQKEQAQDVEDQD 375
T + E Y D+ LL+D + +D DG K+Q Q E+ D
Sbjct: 325 TFNPEIYNDTDFYQSLLKDFINSRMADSTRDGTVRWMATKKQKQKKENVD 374
>SPAC2F7.05c |||translation initiation factor eIF5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +1
Query: 274 LRDNLTLWTSDMQGDGESAETEQKEQ 351
++D+LTL SD++GD E AE+ + +Q
Sbjct: 214 MKDSLTL--SDLRGDEEEAESSRYDQ 237
>SPBC3B9.13c |rpp102|rpp1-2|60S acidic ribosomal protein
Rpp1-2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 319 GESAETEQKEQAQDVEDQD 375
GE+A EQKE+A++ E+ D
Sbjct: 83 GEAAAEEQKEEAKEEEESD 101
>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 455
Score = 25.8 bits (54), Expect = 3.7
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 64 AASDIAMT--ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 198
AA + MT +L T P LG+ + V YY PD A AK A
Sbjct: 265 AAQSVIMTTDQLLNTIPFGLGIITSNRVAYYLGAGLPDNASLTAKVA 311
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 4.8
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = +1
Query: 280 DNLTLWTSDMQGDGESAETEQKE--QAQD-VEDQD 375
D+ W +D + DGE E+E +E + D VED D
Sbjct: 343 DSEAEWVADEEDDGEDLESEDEEVDNSDDIVEDGD 377
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 25.0 bits (52), Expect = 6.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 76 CLRLPCTRPASSRQPPCGRC 17
C R ++ RQ PCGRC
Sbjct: 342 CSRCKKSKKGCDRQRPCGRC 361
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 24.6 bits (51), Expect = 8.4
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = +1
Query: 238 ESYKDSTLIMQLLRDNLTLWT--SDMQGDGESAETEQKEQAQDVEDQDVS**FLTFYLNI 411
E KD +I+ + DN+TL +D+QG E T+Q+ Q+ + E + S L L+
Sbjct: 1325 EKCKDEPVILAGIEDNITLIAEIADLQGLYEF--TQQRLQSLNTETGEKSAPLLLMLLSA 1382
Query: 412 I 414
I
Sbjct: 1383 I 1383
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,441,809
Number of Sequences: 5004
Number of extensions: 21006
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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