Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_A09
(572 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyc... 30 0.21
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 29 0.37
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.5
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch... 27 1.5
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 26 3.4
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 3.4
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 26 4.5
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 6.0
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 6.0
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual 25 7.9
>SPAC4G9.05 |mpf1||meiotic PUF family protein 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 30.3 bits (65), Expect = 0.21
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 503 RQKDTWPSNSGECSASDGIYTN 568
+ KDT+P + CS S GI+TN
Sbjct: 123 KNKDTFPVSKNNCSLSSGIFTN 144
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 29.5 bits (63), Expect = 0.37
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +2
Query: 164 TKESSGSYHILGVFKSNIVHVCSTKSGCFTKWFHTYGSSDSPG 292
+KESS S + V +S ++ FTKWF +S+ PG
Sbjct: 200 SKESSSSSNKFSVSESIANSYSNSSISAFTKWFDRVDASELPG 242
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 27.5 bits (58), Expect = 1.5
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 208 FEYTQDVITSRRFFGGILTTVTSCMYNSVTAVMKLDTNCGAVFARHLS 65
F Q +S +F+GGIL V+ C Y + A L + A+ L+
Sbjct: 215 FVSAQQEDSSCKFYGGILIGVSHCKYAAAGASYPLPIPASGLLAQKLA 262
>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1001
Score = 27.5 bits (58), Expect = 1.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +3
Query: 3 LQLVENIIRDHFYLNTSNQISLRCLANTAPQFVSNFITAVTELYMHDVTVVKMP 164
+ L+ I + N + ++RC N +F+ +F ELY+ V VV MP
Sbjct: 89 IDLLYTQIVPYLQKNNDDAPTIRCALNCTQEFLLSFSNESKELYLKAVDVV-MP 141
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 26.2 bits (55), Expect = 3.4
Identities = 16/64 (25%), Positives = 30/64 (46%)
Frame = +3
Query: 6 QLVENIIRDHFYLNTSNQISLRCLANTAPQFVSNFITAVTELYMHDVTVVKMPPKNLLEV 185
++V+ RD + +NTS + RC+ +P N + + Y +T + N E+
Sbjct: 226 RMVKKSFRDDWTMNTSPEKDCRCVRKFSPDGSCN-SQGILDRY---ITCCQFSAANPNEL 281
Query: 186 ITSW 197
+ SW
Sbjct: 282 LVSW 285
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 3.4
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Frame = +3
Query: 12 VENIIRDHFYLNTSNQISLR--CLANTAPQFVSNFITAVTEL---YMHDVTVVK---MPP 167
V+ ++ F N +S+R C N P + FI E ++H + + M P
Sbjct: 193 VQTLLVSDFTENEPKHLSIRPNCKDNNTPSISNTFIEPYKENNTEHLHLKSAFEPCQMMP 252
Query: 168 KNLLEVITSWVYSNPTLCMSAQLN 239
LLE ++Y NP++ + LN
Sbjct: 253 GMLLEQNPQFLYDNPSIFVIGILN 276
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 4.5
Identities = 11/47 (23%), Positives = 24/47 (51%)
Frame = +3
Query: 363 DFTIPMKKIKLESEFDRSIIKTVKHKALTEAELYIKLHLGVLHSLRA 503
DF IP K K+ F + + + E+ + + LH+ V+++ ++
Sbjct: 408 DFQIPFKTKKIFYSFFVKTLHAISSSSAAESSIALALHMLVINAFQS 454
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +3
Query: 273 AAVTPLAGLVRWCAL---APLCIEENKED 350
A +TPL+ ++ W AL AP+C + D
Sbjct: 824 ADITPLSFIISWTALNTFAPICTSPKEND 852
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 25.4 bits (53), Expect = 6.0
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +3
Query: 9 LVENIIRDHFYLNTSNQISLR--CLAN--TAPQFVSNFITAVTELYMHDVTVVKMPPKNL 176
L+E+I F S SLR C+A T Q + N + TE+ D + + KN
Sbjct: 507 LIEDIANSTFSKEVSLNSSLRWYCVAILVTPLQLIINHLKDKTEMLSLDAVMTLILGKNT 566
Query: 177 LEVITSWVYSNPTLCMS 227
EV +S T C+S
Sbjct: 567 REVNSSIEELKITDCLS 583
>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 146 DSS*NATKESSGSYHILGVFKSNIVHVCSTKSGC 247
DSS +A S Y++ GVF N + S SGC
Sbjct: 43 DSSFSAYLLKSQGYNVEGVFMRNWLDEDSAPSGC 76
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,592
Number of Sequences: 5004
Number of extensions: 48417
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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