Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_A09
(572 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1196 + 28316186-28316290,28317529-28317633,28317725-283177... 31 0.49
12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,167... 30 1.5
11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,172... 30 1.5
01_06_0884 + 32715963-32716284,32716837-32717567 29 3.5
07_03_1126 - 24166758-24166879,24166948-24167386,24167708-241678... 28 4.6
02_05_0454 - 29135223-29135259,29135709-29135742,29136155-291362... 28 4.6
09_06_0178 + 21376146-21376806,21377984-21378101,21378507-21378585 27 8.0
07_01_1017 - 8662144-8662466,8662554-8663535 27 8.0
05_03_0318 - 12292969-12293222,12293305-12293898,12297102-122974... 27 8.0
>06_03_1196 +
28316186-28316290,28317529-28317633,28317725-28317796,
28318023-28318259,28318608-28318718,28318810-28318923,
28319272-28319373,28320238-28320306,28320447-28320553,
28321128-28321224,28321347-28321466,28321663-28321847,
28322065-28322353
Length = 570
Score = 31.5 bits (68), Expect = 0.49
Identities = 18/59 (30%), Positives = 26/59 (44%)
Frame = +3
Query: 267 PMAAVTPLAGLVRWCALAPLCIEENKEDAEMIDFTIPMKKIKLESEFDRSIIKTVKHKA 443
P ++T G RW A + E MI T+P+ L+ DRS+ K +KA
Sbjct: 115 PPGSLTAFIGQPRWLARKKEIYSQLHESLRMISDTVPLAPRMLKDIIDRSMPKLFDNKA 173
>12_01_0222 - 1675077-1675289,1675476-1675553,1675943-1676002,
1676103-1676206,1676321-1676479,1676768-1676894,
1677569-1677736,1677890-1678000,1678090-1678243,
1678409-1678744,1678854-1679038,1679141-1679239,
1679376-1679639,1679776-1679952,1680351-1680644,
1680753-1680920,1681574-1681918,1682002-1682171,
1682272-1682422,1683296-1683365,1683456-1683640,
1683999-1684092,1684195-1684313,1684658-1684717,
1684844-1684930,1685631-1685717,1685905-1686013,
1686105-1686183,1686350-1686437,1686611-1686675,
1687570-1687722,1688514-1688620,1688702-1688784,
1688926-1689016,1689095-1689231,1689612-1689701,
1689795-1689962,1690366-1690560
Length = 1809
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 199 TQDVITSRRFFGGILTTVTSCMYNSVTAVMKLDTNCGAVFARHLSDI 59
T +++ GIL+ V+S S++ VMKL G HLS++
Sbjct: 1179 TMNIVLPYLLSEGILSKVSSVQKASISLVMKLAKGAGPALKPHLSEL 1225
>11_01_0221 - 1720952-1721164,1721351-1721428,1721836-1721895,
1721996-1722099,1722214-1722372,1722668-1722794,
1723469-1723636,1723789-1723899,1723989-1724142,
1724308-1724643,1724753-1724937,1725040-1725138,
1725275-1725538,1725674-1725850,1726249-1726542,
1726649-1726816,1727473-1727817,1727901-1728070,
1728171-1728321,1729193-1729262,1729353-1729537,
1729896-1729989,1730094-1730212,1730558-1730617,
1730744-1730830,1732348-1732434,1732622-1732730,
1732822-1732900,1733067-1733154,1733328-1733392,
1734287-1734439,1735231-1735337,1735419-1735501,
1735643-1735733,1735812-1735948,1736118-1736207,
1736301-1736468,1736875-1737057
Length = 1805
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -2
Query: 199 TQDVITSRRFFGGILTTVTSCMYNSVTAVMKLDTNCGAVFARHLSDI 59
T +++ GIL+ V+S S++ VMKL G HLS++
Sbjct: 1175 TMNIVLPYLLSEGILSKVSSVQKASISLVMKLAKGAGPALKPHLSEL 1221
>01_06_0884 + 32715963-32716284,32716837-32717567
Length = 350
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -3
Query: 534 PLLEGHVSFCLLGDYATLPSV 472
PL EG C+L DYAT P+V
Sbjct: 60 PLAEGPAVSCILSDYATHPAV 80
>07_03_1126 -
24166758-24166879,24166948-24167386,24167708-24167875,
24168388-24168675,24169468-24169575,24169759-24169811,
24170033-24170192,24170353-24170442,24170902-24170953,
24171156-24171283
Length = 535
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +3
Query: 210 PTLCMSAQLNPAALPSGSIPMAAVTPLAG 296
P L Q P+A P+ S+P A+TPL G
Sbjct: 364 PHLSSPFQRTPSARPTFSLPCTAMTPLPG 392
>02_05_0454 -
29135223-29135259,29135709-29135742,29136155-29136233,
29136330-29136623,29136727-29136861,29136956-29137222,
29137309-29137581
Length = 372
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 228 AQLNPAALPSGSIPMAAVTP 287
A NPAALP+ ++PMA V P
Sbjct: 254 AACNPAALPAMALPMAQVEP 273
>09_06_0178 + 21376146-21376806,21377984-21378101,21378507-21378585
Length = 285
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = +1
Query: 469 SYTWECCIVSEQAKGHM 519
SYTW CC VS A G +
Sbjct: 256 SYTWHCCDVSNGAAGSL 272
>07_01_1017 - 8662144-8662466,8662554-8663535
Length = 434
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 316 NAHHLTSPARGVTAA-IGMEPLGKAAGFS*ADMHNVG 209
N H LT P + + + G P G A G++ A H++G
Sbjct: 311 NCHELTIPLQTIEESRAGWAPTGDAPGWTQAPRHSIG 347
>05_03_0318 -
12292969-12293222,12293305-12293898,12297102-12297415,
12297712-12297893,12297960-12298187,12298234-12298698,
12299393-12299443
Length = 695
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -2
Query: 316 NAHHLTSPARGVTAA-IGMEPLGKAAGFS*ADMHNVG 209
N H LT P + + + G P G A G++ A H++G
Sbjct: 595 NCHELTIPLQTIEESRAGWAPTGDAPGWTQAPRHSIG 631
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,474,767
Number of Sequences: 37544
Number of extensions: 307920
Number of successful extensions: 788
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 788
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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