Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A09
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    26   0.23 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.8  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   3.8  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.0  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 111 ITAVTELYMHDVTVVKMPPKNLLEVITSWVYSNPTLCMSAQLNPAALPSGSIPMAAVTP 287
           +TAV ++   DV + K    N+L  + SW    P  C+   L P  L +G    + + P
Sbjct: 3   LTAVRKMTKRDVFIEKEQMMNILMFLPSWDGKMPQPCI---LKPKPLWTGKQISSLIIP 58


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 209 SNIVHVCSTKSGCFTK 256
           +N  H C TK+G +TK
Sbjct: 19  TNSPHTCRTKNGDYTK 34


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 517 CVLLPARRLCNTPKCNFI*SSASVKALCLTVLII 416
           CV +   R    P CN++  S +V  LC+ +L++
Sbjct: 63  CVAVFLVRKLRRP-CNYLLVSLAVSDLCVALLVM 95


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 202  YTQDVITSRRFFGGILTTVTSC 137
            YT  V+   R   G+ TTVT C
Sbjct: 1186 YTIQVLAFTRVGDGVPTTVTYC 1207


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 202  YTQDVITSRRFFGGILTTVTSC 137
            YT  V+   R   G+ TTVT C
Sbjct: 1182 YTIQVLAFTRVGDGVPTTVTYC 1203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,793
Number of Sequences: 438
Number of extensions: 3255
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)