Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A08
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0190 + 15607241-15607409,15607932-15607990,15608883-156089...    29   2.1  
07_03_1289 + 25531531-25531995                                         27   4.8  
11_06_0250 + 21701741-21701826,21702094-21702246,21703060-217031...    27   6.3  
08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413     27   6.3  

>10_08_0190 +
           15607241-15607409,15607932-15607990,15608883-15608991,
           15609394-15609551,15609976-15610044,15610158-15610847,
           15611112-15611629,15611725-15611789,15613010-15613089,
           15613894-15613998,15614768-15614881,15615029-15615168,
           15615257-15615385,15615903-15616055,15616186-15616327
          Length = 899

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 67  FVFACLLALTTVNAAPEPKWKLFKK 141
           F F C + + TVN +PEP ++L ++
Sbjct: 864 FFFLCSMRINTVNHSPEPSYELTRQ 888


>07_03_1289 + 25531531-25531995
          Length = 154

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +1

Query: 298 PPLKIIMSSCKYQTKHLFRSSFSIYYKITAKLML 399
           PP  +++S+C++QT  L   +  +  K+TAK +L
Sbjct: 116 PPAMVVVSACQFQTTPLVSRTIDL-RKLTAKPVL 148


>11_06_0250 +
           21701741-21701826,21702094-21702246,21703060-21703176,
           21703288-21703402,21703604-21703624,21703710-21703757,
           21704156-21704293,21704789-21704884,21704971-21705084,
           21705364-21705432,21705613-21705683,21705785-21705878,
           21706202-21706327,21706425-21706514,21706651-21706749
          Length = 478

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 15/30 (50%), Positives = 16/30 (53%)
 Frame = -3

Query: 222 ICCLADNSDGWTSFDNAISNVLTDSLNLLE 133
           IC  A N DG   F NAI   L DSL  +E
Sbjct: 394 ICISAINGDGLEEFCNAIQAKLKDSLVPIE 423


>08_02_0950 + 22964817-22964952,22965091-22965493,22966351-22967413
          Length = 533

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -1

Query: 218 VAWPTTATAGPALIMP 171
           VAWP T   GPA++ P
Sbjct: 252 VAWPATGGGGPAMVSP 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,544,490
Number of Sequences: 37544
Number of extensions: 144489
Number of successful extensions: 347
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)