Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A08
         (425 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical pr...    27   4.3  
Z46933-4|CAA87037.1|  452|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical pr...    27   7.4  
U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related h...    27   7.4  
AF039053-7|AAC25873.3|  295|Caenorhabditis elegans Serpentine re...    26   9.8  
AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical ...    26   9.8  

>Z81466-5|CAE45043.1| 1309|Caenorhabditis elegans Hypothetical
           protein C09H6.1b protein.
          Length = 1309

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 50  SQESSFSYLLAYWL*QRSMRRRNLNGSFSRRLRESVRTFE 169
           ++ESS S  +  W  +  +R   L+  F+R++ + V+ F+
Sbjct: 671 TEESSLSKSIQLWCQREKLRHPELDEQFTRKMIDGVKGFQ 710


>Z81466-4|CAB03868.2| 1311|Caenorhabditis elegans Hypothetical
           protein C09H6.1a protein.
          Length = 1311

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 50  SQESSFSYLLAYWL*QRSMRRRNLNGSFSRRLRESVRTFE 169
           ++ESS S  +  W  +  +R   L+  F+R++ + V+ F+
Sbjct: 671 TEESSLSKSIQLWCQREKLRHPELDEQFTRKMIDGVKGFQ 710


>Z46933-4|CAA87037.1|  452|Caenorhabditis elegans Hypothetical
           protein F34H10.4 protein.
          Length = 452

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 98  RSMRRRNLNGSFSRRLRESVRTFEMALSKL---VQPSLLSAKQQILLRVKN 241
           + M++ + NGS        V  F   LS     VQP L SAK +IL  V+N
Sbjct: 41  QQMQKASANGSMFPNTLHQVSNFLEKLSVQAYNVQPLLSSAKYEILSNVRN 91


>Z92796-5|CAB07233.1|  518|Caenorhabditis elegans Hypothetical
           protein H25K10.6 protein.
          Length = 518

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
 Frame = +1

Query: 10  ITKKIFNYYLIMNFSRIFFFVFACLLALTTVNAAPEPKW----KLFKKIERVGQNIR 168
           + +++FNY  I + +  FF     + A+ T+N   +       KLFKK++R+   IR
Sbjct: 59  VDEQVFNYTEITSENAQFFPKIDEICAIITINEKTDLSETQLAKLFKKLKRLNGGIR 115


>U58757-1|AAD47117.2|  620|Caenorhabditis elegans Dicer related
           helicase protein 2 protein.
          Length = 620

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 10/40 (25%), Positives = 26/40 (65%)
 Frame = -3

Query: 174 AISNVLTDSLNLLEKLPFRFRRRIDRCQSQ*ASKYEKEDS 55
           A  N++T++++L++  P  FR+ +D   ++   + ++ED+
Sbjct: 414 AKENLMTETISLIQNSPGEFRQCVDEESNKVWPRIQREDT 453


>AF039053-7|AAC25873.3|  295|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 22 protein.
          Length = 295

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 9/35 (25%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +1

Query: 22  IFNYY-LIMNFSRIFFFVFACLLALTTVNAAPEPK 123
           +F+Y+ +++NF  +FF +F+C + +  +    + K
Sbjct: 1   MFSYHAIVINFIGVFFAIFSCFINIFNLKKLEKKK 35


>AC024211-5|AAF36063.2| 1119|Caenorhabditis elegans Hypothetical
            protein Y76B12C.2 protein.
          Length = 1119

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -3

Query: 195  GWTSFDNAISNVLTDSLNLLEKLPFRFRRRIDRCQSQ*ASKYEKEDS*EIH 43
            GW +FD   ++ + D   +LEK    F    ++ +S  A K EK+   +IH
Sbjct: 990  GW-AFDGGFTHPVIDGAIVLEKDAIDFINAWEKLESGRAEKEEKQRVEKIH 1039


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,874,417
Number of Sequences: 27780
Number of extensions: 140676
Number of successful extensions: 321
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)