Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_A07
(593 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 249 3e-67
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 168 6e-43
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 167 8e-43
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 149 2e-37
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 128 5e-31
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 115 6e-27
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 111 1e-25
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 108 5e-25
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 107 1e-24
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 101 8e-23
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 97 2e-21
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 93 3e-20
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 90 2e-19
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 90 3e-19
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 89 5e-19
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 83 3e-17
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 79 5e-16
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 64 1e-11
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 64 2e-11
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 63 3e-11
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 50 2e-07
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 50 3e-07
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 46 3e-06
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 46 3e-06
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 46 4e-06
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 45 7e-06
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 43 4e-05
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 42 5e-05
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 37 0.003
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 30 0.22
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 28 0.89
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 28 1.2
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 28 1.2
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 27 2.1
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 27 2.7
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 26 4.8
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 26 4.8
SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.8
SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4 |Schizosac... 25 6.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 249 bits (609), Expect = 3e-67
Identities = 114/188 (60%), Positives = 152/188 (80%)
Frame = +1
Query: 1 QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQ 180
+R TYLVLDEADRMLDMGFEPQIRKI+DQIRPDRQT+M+SATWPKEV++LA DYL DY+Q
Sbjct: 268 RRVTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTVMFSATWPKEVQRLARDYLNDYIQ 327
Query: 181 INIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENI 360
+ +GSL L+A+HNI QIV+V +K +L ++E+ +++D K +IF TKR A++I
Sbjct: 328 VTVGSLDLAASHNIKQIVEVVDNADKRARLGKDIEEVLKDRD--NKVLIFTGTKRVADDI 385
Query: 361 TRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFD 540
TR +R+ GWPA+ +HGDK Q ERD VL +F+ G+S I+VATDVA+RG+DV GI +V N+D
Sbjct: 386 TRFLRQDGWPALAIHGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYD 445
Query: 541 YPNSSEDY 564
+P ++EDY
Sbjct: 446 FPGNTEDY 453
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 168 bits (408), Expect = 6e-43
Identities = 88/188 (46%), Positives = 127/188 (67%), Gaps = 4/188 (2%)
Frame = +1
Query: 13 YLVLDEADRMLDMGFEPQIRKIIDQIR----PDRQTLMWSATWPKEVRKLAEDYLGDYVQ 180
+LVLDEADRMLDMGFEPQIR I++ +RQTLM+SAT+P++++ LA D+L DYV
Sbjct: 332 FLVLDEADRMLDMGFEPQIRHIVEGADMTSVEERQTLMFSATFPRDIQLLARDFLKDYVF 391
Query: 181 INIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENI 360
+++G + S + NI Q V ++ EK + L +L + P T+IFVETKR A+ +
Sbjct: 392 LSVGRVG-STSENITQKVVHVEDSEKRSYLLDILHTL----PPEGLTLIFVETKRMADTL 446
Query: 361 TRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFD 540
T + +PA +HGD+TQ+ER+ L F+ GR+SI+VAT VA+RGLD+ + +VIN+D
Sbjct: 447 TDYLLNSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYD 506
Query: 541 YPNSSEDY 564
P +DY
Sbjct: 507 LPTDIDDY 514
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 167 bits (407), Expect = 8e-43
Identities = 84/194 (43%), Positives = 127/194 (65%)
Frame = +1
Query: 4 RCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQI 183
RCTYLVLDEADRM D+GFEPQ+ +II+ IRPDRQT+++SAT+P+ + LA L V+I
Sbjct: 568 RCTYLVLDEADRMFDLGFEPQVMRIINNIRPDRQTVLFSATFPRAMEALARKVLKKPVEI 627
Query: 184 NIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENIT 363
+G + A+ + QIV+V E K ++L LL E+ NQ +T++FV+ + A+ +
Sbjct: 628 TVGGRSVVAS-EVEQIVEVRPEESKFSRLLELLGELYNNQ-LDVRTLVFVDRQESADALL 685
Query: 364 RNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDY 543
++ + G+ + +HG K Q +RD + +K G +L+AT V ARGLDV ++ V+N+D
Sbjct: 686 SDLMKRGYTSNSIHGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDC 745
Query: 544 PNSSEDYFIELVGQ 585
PN EDY + VG+
Sbjct: 746 PNHMEDY-VHRVGR 758
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 149 bits (362), Expect = 2e-37
Identities = 88/191 (46%), Positives = 119/191 (62%), Gaps = 7/191 (3%)
Frame = +1
Query: 13 YLVLDEADRMLDMGFEPQIRKIIDQIRPD------RQTLMWSATWPKEVRKLAEDYLGDY 174
YLVLDEADRMLD GFE IR II PD RQT+ +SATWP+ VR LA +L D
Sbjct: 312 YLVLDEADRMLDTGFEQDIRNIISHT-PDPTRNGSRQTVFFSATWPESVRALAATFLKDP 370
Query: 175 VQINIGSLQLSANHNILQIVDVCQE-HEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKA 351
V+I IGS +L+A+ NI QIV++ + KE L+ LL++ + K +IFV K++A
Sbjct: 371 VKITIGSDELAASQNITQIVEILDDPRSKERMLDNLLRKHLSSGGKDDKILIFVLYKKEA 430
Query: 352 ENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVI 531
+ + R + V +HGD +Q R + L FK G+ +LVATDVAARGLD+ ++ VI
Sbjct: 431 ARVEGTLARK-YNVVGIHGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVI 489
Query: 532 NFDYPNSSEDY 564
N +P + EDY
Sbjct: 490 NVTFPLTIEDY 500
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 128 bits (310), Expect = 5e-31
Identities = 73/206 (35%), Positives = 115/206 (55%), Gaps = 19/206 (9%)
Frame = +1
Query: 4 RCTYLVLDEADRMLDMGFEPQIRKIIDQIRPD-------------------RQTLMWSAT 126
+CTY+V+DEADRMLDMGFE + KI+ + RQT+M+SAT
Sbjct: 399 QCTYVVMDEADRMLDMGFEDDVNKILSSLPSSNASEKDGSILATANSSSSRRQTIMFSAT 458
Query: 127 WPKEVRKLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQD 306
P V LA+ YL + V + IG++ + + + Q V++ + K+ + ++EI ++
Sbjct: 459 LPPRVANLAKSYLIEPVMLTIGNIGQAVDR-VEQRVEMISDDSKKWRR---VEEILESNR 514
Query: 307 PGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATD 486
IIFV KR E I + + GW AV +HG K+Q++R+ + Q + + ILVATD
Sbjct: 515 FSPPIIIFVNLKRNIEAIAKQLNAIGWHAVTLHGSKSQEQRERAIEQLRNKTADILVATD 574
Query: 487 VAARGLDVDGIKYVINFDYPNSSEDY 564
+A RG+D+ + V+N++ S EDY
Sbjct: 575 IAGRGIDIPNVSLVLNYNMAKSIEDY 600
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 115 bits (276), Expect = 6e-27
Identities = 73/191 (38%), Positives = 104/191 (54%)
Frame = +1
Query: 13 YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIG 192
YL++DEADR+LDM F P I KI+ I +R+TL++SAT +V KL L V++ +
Sbjct: 192 YLIMDEADRLLDMDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVS 251
Query: 193 SLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNI 372
S + S ++Q K+ L L+ E+ N IIF T + + +
Sbjct: 252 S-KFSTVDTLIQRYLFFPFKHKDTYLVYLVNELAGNS-----IIIFARTVNDTQRLAILL 305
Query: 373 RRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNS 552
R G+ A+ +HG +Q R L +FK G S LVATDVAARGLD+ + VIN+D P
Sbjct: 306 RTLGFSAIPLHGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTD 365
Query: 553 SEDYFIELVGQ 585
S+ Y I VG+
Sbjct: 366 SKAY-IHRVGR 375
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 111 bits (266), Expect = 1e-25
Identities = 64/189 (33%), Positives = 104/189 (55%)
Frame = +1
Query: 19 VLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGSL 198
VLDEAD ML GF+ QI I + P Q ++ SAT P++V ++ ++ D ++I +
Sbjct: 166 VLDEADEMLSRGFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKD 225
Query: 199 QLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRR 378
+L+ V V +E K + L L + + Q +IF T+RK + +T +
Sbjct: 226 ELTLEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQ-----AVIFCNTRRKVDWLTEQLTE 280
Query: 379 YGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSE 558
+ MHGD Q +RD ++++F+ G S IL+ TD+ ARG+DV + VIN+D P + E
Sbjct: 281 RDFTVSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRE 340
Query: 559 DYFIELVGQ 585
+Y I +G+
Sbjct: 341 NY-IHRIGR 348
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 108 bits (260), Expect = 5e-25
Identities = 61/190 (32%), Positives = 105/190 (55%)
Frame = +1
Query: 16 LVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGS 195
L+LDEAD +L+ GF+ QI I + P Q ++ SAT P++V ++ + + V+I +
Sbjct: 167 LILDEADELLNQGFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKR 226
Query: 196 LQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIR 375
+L+ + V +E K + L L + Q +IF ++RK + +T +R
Sbjct: 227 DELTLEGLKQYFIAVEKEEWKFDTLCDLYDTLTITQ-----AVIFCNSRRKVDWLTEKMR 281
Query: 376 RYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSS 555
+ MHG+ Q+ERD ++ F++G S +L+ TD+ ARG+DV + VIN+D P +
Sbjct: 282 EANFTVTSMHGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANR 341
Query: 556 EDYFIELVGQ 585
E+Y I +G+
Sbjct: 342 ENY-IHRIGR 350
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 107 bits (257), Expect = 1e-24
Identities = 57/185 (30%), Positives = 101/185 (54%), Gaps = 1/185 (0%)
Frame = +1
Query: 13 YLVLDEADRMLD-MGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINI 189
+ VLDE D++L+ + I+++ P +Q +M+SAT E+R + + ++ + ++I +
Sbjct: 200 HFVLDECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYV 259
Query: 190 GSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRN 369
H + Q +E K K+N LL + NQ +IFV++ +A + R
Sbjct: 260 DDETKLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQ-----VVIFVKSVSRANELDRL 314
Query: 370 IRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPN 549
+R +P++C+HG Q+ER + FK+ I VATDV RG+D++ + VIN+D P+
Sbjct: 315 LRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPD 374
Query: 550 SSEDY 564
S + Y
Sbjct: 375 SPDSY 379
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 101 bits (242), Expect = 8e-23
Identities = 56/186 (30%), Positives = 95/186 (51%)
Frame = +1
Query: 7 CTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQIN 186
CT V+DEAD++L F P I +++ +RQ ++SAT+P V+ + +L +IN
Sbjct: 187 CTTFVMDEADKLLSPEFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEIN 246
Query: 187 IGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITR 366
+ +L+ + Q E +K + LN L ++ NQ +IIF + + E + +
Sbjct: 247 LMD-ELTLR-GVTQYYAFVDESQKVHCLNTLFSKLQINQ-----SIIFCNSTNRVELLAK 299
Query: 367 NIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYP 546
I G+ H Q R+ V + F+ G LV +D+ RG+D+ + VINFD+P
Sbjct: 300 KITELGYSCFYSHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFP 359
Query: 547 NSSEDY 564
++E Y
Sbjct: 360 KNAETY 365
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 97.1 bits (231), Expect = 2e-21
Identities = 62/177 (35%), Positives = 97/177 (54%), Gaps = 1/177 (0%)
Frame = +1
Query: 19 VLDEADRMLDM-GFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGS 195
VLDEAD MLD G Q +I + + Q +++SAT+ + V K AE + + +I + +
Sbjct: 259 VLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKT 318
Query: 196 LQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIR 375
+LS I Q+ CQ +E+K NVL++ G ++IIF + K AE I R +
Sbjct: 319 EELSVE-GIKQLYMDCQS--EEHKYNVLVELYGLLTI--GQSIIFCKKKDTAEEIARRMT 373
Query: 376 RYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYP 546
G C+ G+ +RD ++ F+ G S +LV T+V ARG+DV + V+N+D P
Sbjct: 374 ADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMP 430
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 93.1 bits (221), Expect = 3e-20
Identities = 60/185 (32%), Positives = 100/185 (54%), Gaps = 2/185 (1%)
Frame = +1
Query: 16 LVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIGS 195
+V+DEADRML+ GF ++ +II RQT+++SAT +V L L V++ + +
Sbjct: 409 MVMDEADRMLEDGFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDN 468
Query: 196 LQLSANHNILQIVDVCQEHE--KENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRN 369
+ +A + V V + E + L L +E+ +TIIF +K A +
Sbjct: 469 KKTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHR-----RTIIFFRSKAFAHKMRVI 523
Query: 370 IRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPN 549
A +HG +Q++R L F++G+ + L+ATDVA+RG+D+ GI+ VIN++ P
Sbjct: 524 FGLLSLNATEIHGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPA 583
Query: 550 SSEDY 564
+ E Y
Sbjct: 584 THEVY 588
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 90.2 bits (214), Expect = 2e-19
Identities = 57/196 (29%), Positives = 104/196 (53%), Gaps = 1/196 (0%)
Frame = +1
Query: 1 QRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTL-MWSATWPKEVRKLAEDYLGDYV 177
++ + V+DEADR+ + GF Q I+ ++SAT P V +LA+ D +
Sbjct: 188 EKVEFFVMDEADRLFEPGFIEQTDHILSACTSSNICKSLFSATIPSRVEELAKVVTVDPI 247
Query: 178 QINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAEN 357
+I +G + + +++ V + K V+L+++ N + + +IFV+ +A+
Sbjct: 248 RIIVGLKDAATDSIDQRLLFVGSDTSKI----VILRQMISNGELKPRVVIFVQDIERAKA 303
Query: 358 ITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINF 537
+ + +HG+ Q +R+E L +F++G +L+ATD+ ARG+D G+K VINF
Sbjct: 304 LYTELLFDEIHVGVIHGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINF 363
Query: 538 DYPNSSEDYFIELVGQ 585
D+P S Y I +G+
Sbjct: 364 DFPQSVHSY-IHRIGR 378
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 89.8 bits (213), Expect = 3e-19
Identities = 60/193 (31%), Positives = 107/193 (55%), Gaps = 3/193 (1%)
Frame = +1
Query: 16 LVLDEADRMLDMGFEPQIRKIIDQIRP--DRQTLMWSATWPKEVRKLAEDYLGDY-VQIN 186
LV+DEADR+L++GFE ++R+I+ +I P +RQTL++SAT +V LA L + +N
Sbjct: 240 LVIDEADRILEIGFEDEMRQIM-KILPSENRQTLLFSATQTTKVEDLARISLKPGPLYVN 298
Query: 187 IGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITR 366
+ S + ++ L+ V + +K + +L + +N K I+F+ + + +
Sbjct: 299 VDSGKPTSTVEGLEQGYVVVDSDK--RFLLLFSFLKRNLKK--KVIVFMSSCASVKYMAE 354
Query: 367 NIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYP 546
+ P + +HG + QQ R ++F IL+ T+VAARGLD+ + +++ +D P
Sbjct: 355 LLNYIDLPVLDLHGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPP 414
Query: 547 NSSEDYFIELVGQ 585
+ DY I VG+
Sbjct: 415 DDPRDY-IHRVGR 426
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 89.0 bits (211), Expect = 5e-19
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 4/194 (2%)
Frame = +1
Query: 16 LVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYL--GDYVQINI 189
L+LDEADR+LDMGF + I+ + RQT+++SAT K V+ LA L D++ ++
Sbjct: 189 LILDEADRILDMGFRTTLDAIVSSLPVHRQTMLFSATQTKSVKDLARLSLQNPDFISVHE 248
Query: 190 GSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRN 369
S N+ Q E KL++L I + KTI+F+ + ++ +
Sbjct: 249 NDTS-STPSNLNQFYLTVPLTE---KLDILFGFIRTHLK--FKTIVFLSSCKQVRFVYET 302
Query: 370 IRRY--GWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDY 543
RR G + +HG + Q R EV +F R +L TD+ ARGLD + +VI D
Sbjct: 303 FRRMRPGISLLHLHGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDA 362
Query: 544 PNSSEDYFIELVGQ 585
P + Y I VG+
Sbjct: 363 PEDVDTY-IHRVGR 375
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 83.0 bits (196), Expect = 3e-17
Identities = 66/201 (32%), Positives = 98/201 (48%), Gaps = 6/201 (2%)
Frame = +1
Query: 1 QRCTYLVLDEADRMLDMGFEPQIRKIIDQI--RPDRQTLMWSATWPKEVRKLA----EDY 162
+R +LV+DEADR+L F + + DRQTL+++AT +R+L ++
Sbjct: 152 RRIKFLVMDEADRLLSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQLKYQPQKNN 211
Query: 163 LGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETK 342
+ + +S + Q +E L V L I +N A IIFV
Sbjct: 212 KPPLWLYEVETDNISVPSTLQQSYIFVSSQVREAYL-VHLLTIPENAKKSA--IIFVNRT 268
Query: 343 RKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIK 522
R AE I +R +H + Q+ER L +F+ + ILVATDVA+RGLD+ ++
Sbjct: 269 RTAELIYSILRLLELRVTELHSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQ 328
Query: 523 YVINFDYPNSSEDYFIELVGQ 585
VINFD P +DY I VG+
Sbjct: 329 LVINFDLPRDPDDY-IHRVGR 348
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 79.0 bits (186), Expect = 5e-16
Identities = 55/193 (28%), Positives = 99/193 (51%), Gaps = 4/193 (2%)
Frame = +1
Query: 19 VLDEADRMLDMGFEPQIRKIIDQIRPDR-QTLMWSATWPKEVRKLAEDYLG-DYVQIN-I 189
+LDEADR++DMGF I I + + + + L +SAT P +V + LG D+ IN +
Sbjct: 193 ILDEADRLMDMGFAESILNIHEAVTTTKTRKLCFSATMPPKVSNVFRGILGTDFKLINCL 252
Query: 190 GSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRN 369
+ + + Q V + + + LLQ++ + +P ++ I+F+ T + +
Sbjct: 253 DPNEPPTHERVPQFVIETKLDKVFSSSLSLLQQL-TSSNPSSRIIVFLPTISMVDFVGGV 311
Query: 370 IRRY-GWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYP 546
+ + P +H T +R + F++ +S IL ATDV ARG+D I V+ P
Sbjct: 312 LENHLKIPCFILHSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGP 371
Query: 547 NSSEDYFIELVGQ 585
++++DY I +G+
Sbjct: 372 SNTDDY-IHRIGR 383
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 64.5 bits (150), Expect = 1e-11
Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 8/185 (4%)
Frame = +1
Query: 16 LVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVR---KLAEDYLGDYVQIN 186
L+LDEAD ++DMGF+ ++ II Q+ R+T ++SAT V K+A V +
Sbjct: 158 LILDEADTLIDMGFQRTLQSIISQLPKQRRTGLFSATMNDTVSSFLKIAGLRNSVRVSVT 217
Query: 187 IGSLQLSANH-NILQIVD-VCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENI 360
+ S ++ + L I V K + LL I K I+F + E
Sbjct: 218 VTSKKIDTRTPSSLAIQSLVIPPIYKVQCMIHLLCTIEYE-----KAIVFFSSCASVEYF 272
Query: 361 TRNIRRYGWP--AVCMHGDKTQQERDEVLYQFKEG-RSSILVATDVAARGLDVDGIKYVI 531
Y P V +HG + Q R +FK+ + ++L TD+A+RGLD+ + +V+
Sbjct: 273 NSLFLTYKLPFEIVALHGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVL 332
Query: 532 NFDYP 546
D P
Sbjct: 333 QLDPP 337
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 63.7 bits (148), Expect = 2e-11
Identities = 55/208 (26%), Positives = 101/208 (48%), Gaps = 25/208 (12%)
Frame = +1
Query: 16 LVLDEADRMLDMGFEPQIRKIID----QIRPDRQTLMWSATWPKEVR-KLAEDYLGDYVQ 180
LVLDEADR+L ++ K+++ + RQT ++SAT+ + ++ +L ++ G+ +
Sbjct: 272 LVLDEADRLLQKSHFEELSKLLEILGNPMHTQRQTFIFSATFDEGLQQRLKKNMKGNITE 331
Query: 181 INIGSLQ--------------LSAN------HNILQIVDVCQEHEKENKLNVLLQEIGQN 300
++ L AN +L+ + C EK+ L L+
Sbjct: 332 KYNSPMENMLKEVRFFGKPKFLDANPQSAVASRVLEGLIECAPAEKDLYLYYLIMRY--- 388
Query: 301 QDPGAKTIIFVETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVA 480
PG KT++F + IT + P+ +H Q++R + L +FK +LV
Sbjct: 389 --PG-KTMVFANGIEDIKRITPFLNELKVPSYPLHAQLDQKKRLQSLEKFKNNPKGVLVC 445
Query: 481 TDVAARGLDVDGIKYVINFDYPNSSEDY 564
TDVAARG+D+ + +VI++ P++++ Y
Sbjct: 446 TDVAARGIDIPSVTHVIHYHVPHTADMY 473
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 63.3 bits (147), Expect = 3e-11
Identities = 38/134 (28%), Positives = 71/134 (52%)
Frame = +1
Query: 184 NIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENIT 363
+I L L N +I +V +++ L + L+ G T++FV TK E ++
Sbjct: 306 DIIKLPLKDNVRPREIGNVNNPKKRKRALELALK--GSESGSPDSTLVFVPTKHHVEYVS 363
Query: 364 RNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDY 543
+ + G+ ++G Q+ R + F+ G++++LV TDVA+RG+D+ + VIN+D+
Sbjct: 364 ELLVQAGYSVSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDF 423
Query: 544 PNSSEDYFIELVGQ 585
P + F+ VG+
Sbjct: 424 PPQPK-VFVHRVGR 436
Score = 53.6 bits (123), Expect = 2e-08
Identities = 30/93 (32%), Positives = 53/93 (56%)
Frame = +1
Query: 13 YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIG 192
Y+V DEADR+ +MGF Q+ +I+ + RQTL++SAT P+ + A+ L D V + +
Sbjct: 216 YVVFDEADRLFEMGFAAQLTEILHALPTSRQTLLFSATLPRTLVDFAKAGLQDPVLVRL- 274
Query: 193 SLQLSANHNILQIVDVCQEHEKENKLNVLLQEI 291
++ + ++ + E+E L +LQ+I
Sbjct: 275 DVESKVSADLQSAFFSVKTAEREAALLCILQDI 307
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 50.4 bits (115), Expect = 2e-07
Identities = 37/175 (21%), Positives = 82/175 (46%)
Frame = +1
Query: 13 YLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGDYVQINIG 192
+LV+DEAD ML G+ ++ + + Q+ + SAT K + L + + + +
Sbjct: 167 FLVIDEADLMLSFGYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPFILAVK 226
Query: 193 SLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNI 372
+ A+ + Q V C E +K +LL + + K +IFV + + +
Sbjct: 227 DKE--ASGKLTQYVVKCSEQDKFLLAYILL----KLRLIKGKILIFVNEINRCYRLKLFL 280
Query: 373 RRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINF 537
++G ++ ++ + R +L Q+ +G I++ATD + +++ ++ ++F
Sbjct: 281 EQFGLKSLVLNSELPVNSRLHILEQYNKGLYQIIIATDESGMMGEIEELENNVDF 335
Score = 31.5 bits (68), Expect = 0.096
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 493 ARGLDVDGIKYVINFDYPNSSEDYFIELVGQ 585
ARGLD + + V+NFD P++++ Y I +G+
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSY-IHRIGR 416
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 49.6 bits (113), Expect = 3e-07
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = +1
Query: 400 MHGDKTQQERDEVLYQFKEGRSS---ILVATDVAARGLDVDGIKYVINFDYPNSSEDY 564
+HG +QQ R L F S IL+ TDVAARGLD+ + V+ +D P S++DY
Sbjct: 473 LHGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDY 530
Score = 37.1 bits (82), Expect = 0.002
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 13/66 (19%)
Frame = +1
Query: 13 YLVLDEADRMLDMGFEPQIRKIIDQIR------------PDRQ-TLMWSATWPKEVRKLA 153
++VLDE DR++DMGFE + KI+ + P R+ T++ SAT V++L+
Sbjct: 297 WVVLDEGDRLMDMGFEETLTKILSYLESQSSIIKKDLSIPSRKVTMLCSATMKDTVKRLS 356
Query: 154 EDYLGD 171
+ L D
Sbjct: 357 DSALKD 362
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 46.4 bits (105), Expect = 3e-06
Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 8/198 (4%)
Frame = +1
Query: 4 RCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTL-MWSATWPKEVRKLA-EDYLGDYV 177
R +V+DEA +L G ++ L + SAT+P+++ +A + + ++
Sbjct: 1315 RLARVVIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTNFY 1374
Query: 178 QINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAEN 357
+ S +A NI + E L L++ + G + IIF TK+ E
Sbjct: 1375 VLRETS---TARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDG-RAIIFCRTKKDVEY 1430
Query: 358 ITRNIRR---YGWPAVCMH-GDKTQQERDEVLYQFKE--GRSSILVATDVAARGLDVDGI 519
I R + + + V ++ GD + +ER F+ G++ I++AT G++ G+
Sbjct: 1431 IHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGV 1490
Query: 520 KYVINFDYPNSSEDYFIE 573
+ V+++ P SS DY E
Sbjct: 1491 RLVVHYGLPASSMDYVQE 1508
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 46.4 bits (105), Expect = 3e-06
Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 8/198 (4%)
Frame = +1
Query: 4 RCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTL-MWSATWPKEVRKLA-EDYLGDYV 177
R +V+DEA +L G ++ L + SAT+P+++ +A + + ++
Sbjct: 1315 RLARVVIDEAHLLLTSGAWRTALSRASRLSGLYAPLHLLSATFPRQLEMVARQTFCTNFY 1374
Query: 178 QINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAEN 357
+ S +A NI + E L L++ + G + IIF TK+ E
Sbjct: 1375 VLRETS---TARENIFYFLHPYDNTEFLLDLRTLMKRTKVFEGDG-RAIIFCRTKKDVEY 1430
Query: 358 ITRNIRR---YGWPAVCMH-GDKTQQERDEVLYQFKE--GRSSILVATDVAARGLDVDGI 519
I R + + + V ++ GD + +ER F+ G++ I++AT G++ G+
Sbjct: 1431 IHRRLHQSDLFAHTHVTIYTGDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGV 1490
Query: 520 KYVINFDYPNSSEDYFIE 573
+ V+++ P SS DY E
Sbjct: 1491 RLVVHYGLPASSMDYVQE 1508
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 46.0 bits (104), Expect = 4e-06
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +1
Query: 322 IIFVETKRKAENITRNIRR-YGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAAR 498
II+ ++ E + +R YG A H + ER + +++ G I+VAT
Sbjct: 746 IIYCLSRTSCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGM 805
Query: 499 GLDVDGIKYVINFDYPNSSEDYFIE 573
G+D +++VI+ +P S E Y+ E
Sbjct: 806 GVDKGDVRFVIHHSFPKSLEGYYQE 830
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 45.2 bits (102), Expect = 7e-06
Identities = 42/152 (27%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Frame = +1
Query: 145 KLAEDYLGDYVQINIGSLQLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTI 324
+LA D L +V+ + + + S N + + D +K KL LL+ + D +T+
Sbjct: 308 ELAIDRLKIFVE-DWKNNKYSDNGPRIPVFDSTDVTDKVFKLLELLKATYRKSD-SVRTV 365
Query: 325 IFVETKRKAENITRNIRRYGWPAVCMH-----GDKTQQE-------RDEVLYQFKEGRSS 468
IFVE K A ++ ++ P + H G Q E + + L++FK G+ +
Sbjct: 366 IFVERKATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKYN 425
Query: 469 ILVATDVAARGLDVDGIKYVINFDYPNSSEDY 564
+L+AT VA G+DV VI F+ + Y
Sbjct: 426 VLIATAVAEEGIDVPSCNLVIRFNICRTVTQY 457
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 42.7 bits (96), Expect = 4e-05
Identities = 19/50 (38%), Positives = 32/50 (64%)
Frame = +1
Query: 415 TQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNSSEDY 564
++ ER +++ +F G ++LV +D+ ARG+DV + VIN+D P S Y
Sbjct: 472 SRDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSY 521
Score = 31.5 bits (68), Expect = 0.096
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 1 QRCTYLVLDEADRMLDMGFEPQIRKIIDQI 90
Q Y+V+DEADR+LD F+ + ++ +I
Sbjct: 284 QHLRYMVIDEADRLLDQSFQDWVDTVMMEI 313
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 42.3 bits (95), Expect = 5e-05
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Frame = +1
Query: 250 HEKENKLNVLLQE-IGQNQDPGAKTIIFVETKRKAENITRNIRRY----------GWPAV 396
H K L ++ E + Q + +IFVE + AE I R + ++ G AV
Sbjct: 411 HPKLEHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAV 470
Query: 397 CMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFD 540
+Q+ ++E + QF++G + L+AT + GLD+ + +I +D
Sbjct: 471 RKAAGMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYD 518
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 36.7 bits (81), Expect = 0.003
Identities = 34/126 (26%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Frame = +1
Query: 214 HNILQIVDVCQEHEKENKLNVLLQEIGQNQDPG---AKTIIFVETKRKAENITRNIRRY- 381
HN +Q + + H K N L LL+E ++ G + +IF E + AE IT +
Sbjct: 438 HNKIQGLSL--NHPKMNHLLELLKEHFKDTSEGYQNQRVMIFTEFRNTAEYITTTLLAIR 495
Query: 382 ---------GWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVIN 534
G Q ++ E + QF+ G + LVAT + GLD+ +I
Sbjct: 496 PMVRASLFIGQANSAYSTGMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIIC 555
Query: 535 FDYPNS 552
+D +S
Sbjct: 556 YDASSS 561
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 30.3 bits (65), Expect = 0.22
Identities = 22/112 (19%), Positives = 51/112 (45%)
Frame = +1
Query: 199 QLSANHNILQIVDVCQEHEKENKLNVLLQEIGQNQDPGAKTIIFVETKRKAENITRNIRR 378
Q A++ ++ V Q H E ++L+ GQ + + I++ +K ++I +
Sbjct: 697 QPEADYLDAALMTVMQIHLSEGPGDILVFLTGQEEIDTSCEILYERSKMLGDSIPELV-- 754
Query: 379 YGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVIN 534
+ ++ + + + G +++AT++A L +DGI YV++
Sbjct: 755 ----ILPVYSALPSEIQSRIFEPAPPGGRKVVIATNIAETSLTIDGIYYVVD 802
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 457 GRSSILVATDVAARGLDVDGIKYVINFDY 543
G ++VAT++A L V GI YV++ Y
Sbjct: 757 GVRKVVVATNIAETSLTVHGISYVVDTGY 785
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +1
Query: 415 TQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVINFDYPNS 552
T QER ++ + G+ ++AT+ G+D+ + VI +P S
Sbjct: 595 TVQERRKIESEMFNGKLYGIIATNALELGIDIGSLDAVITIGFPYS 640
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +1
Query: 415 TQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVIN 534
T +++ +V EG +VAT+VA + + I+YV++
Sbjct: 712 TTEDQMKVFDSSPEGHRMCIVATNVAETSITIPNIRYVVD 751
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 27.1 bits (57), Expect = 2.1
Identities = 44/187 (23%), Positives = 85/187 (45%), Gaps = 14/187 (7%)
Frame = +1
Query: 16 LVLDEADR---MLDM--GFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGD--- 171
L+LDEA M DM GF ++KII + RP + ++ SAT E + +E + G
Sbjct: 213 LILDEAHERTLMTDMLLGF---VKKIIKK-RPALRVIIMSATLNAE--RFSEFFDGAEIC 266
Query: 172 YVQINIGSLQLSANHNIL-QIVDVC-----QEHEKENKLNVLLQEIGQNQDPGAKTIIFV 333
Y+ +Q+ + +D C Q H K ++L+ GQ++ + +I
Sbjct: 267 YISGRQYPVQIHYTYTPEPDYLDACLRTIFQLHTKLPPGDILVFLTGQDEIEALEALIKS 326
Query: 334 ETKRKAENITRNIRRYGWPAVCMHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVD 513
+K+ N+ + A + Q+++ +V ++++T++A + +
Sbjct: 327 YSKQLPSNLPQI------QACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTIS 380
Query: 514 GIKYVIN 534
GI+YVI+
Sbjct: 381 GIRYVID 387
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/45 (24%), Positives = 23/45 (51%)
Frame = +1
Query: 400 MHGDKTQQERDEVLYQFKEGRSSILVATDVAARGLDVDGIKYVIN 534
+H T E+ V + ++ +T++A + +DGI YV++
Sbjct: 275 LHAGLTVDEQMRVFNIYDGDFRKVIFSTNIAETSITIDGIVYVVD 319
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 453 FKLV*YFIPFLLCFVTVHAHSWPSIS 376
+KL +PFL V HA WPS++
Sbjct: 30 YKLWKQNVPFLYDLVITHALEWPSLT 55
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/22 (36%), Positives = 17/22 (77%)
Frame = +1
Query: 469 ILVATDVAARGLDVDGIKYVIN 534
++++T++A L +DGI YV++
Sbjct: 354 VVISTNIAETSLTIDGIVYVVD 375
>SPAC7D4.05 |||hydrolase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 46 DMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVRKLAEDYLGD 171
D+GFE R+I D L+ P+E L +D + D
Sbjct: 157 DVGFEKPSREIFDYAMEKAVKLLGQEIQPEECMHLGDDLIKD 198
>SPBC3D6.09 |dpb4||DNA polymerase epsilon subunit Dpb4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 299 TKTLVQR-PLYLLKLKEKRRTLPEISD 376
+KTL + Y L LKEKR LP +SD
Sbjct: 89 SKTLKKHLEAYELALKEKRLKLPNVSD 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,632,057
Number of Sequences: 5004
Number of extensions: 56471
Number of successful extensions: 260
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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