Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A05
         (423 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   1.2  
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce...    26   2.1  
SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr 2||...    25   4.8  

>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -2

Query: 269 KDKDCFISGTAYGSGISAPGSPT---GSDCLKCSNMASI 162
           ++K C+  GTA       P SP    G++C KC  +  I
Sbjct: 56  QEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHI 94


>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 145 KKMSDNILAILEHFKQSDPVGLPG 216
           K   DN L   EH+KQS   GL G
Sbjct: 683 KDFGDNPLDTFEHYKQSVDAGLSG 706


>SPBC887.17 |||uracil permease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 625

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +1

Query: 103 DETTTH-NIQLAEGE-KKMSDNILAILEHFKQSDPVGLPGADIPEPYAVPDM 252
           +E TTH ++ + E   KKM D  +++ E   +S+       D   PYA  DM
Sbjct: 568 NEKTTHEDVTMKETSLKKMDDERISVDEAVGESESFSNRQQDFRTPYAGIDM 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,721
Number of Sequences: 5004
Number of extensions: 35401
Number of successful extensions: 106
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)