Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0003_A05
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0921 + 32739495-32739696,32739815-32740002,32740132-327403... 34 0.054
01_01_0536 - 3926450-3928447 30 0.67
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 29 1.5
03_01_0431 + 3324118-3324405,3324513-3324572,3325352-3326143 28 2.7
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 28 3.6
03_02_0289 - 7115045-7115867,7116373-7116929,7117327-7117544,711... 28 3.6
03_05_1130 + 30602452-30602712,30603033-30603950,30605501-306055... 27 4.7
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239... 27 6.2
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76... 27 8.2
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764... 27 8.2
>02_05_0921 +
32739495-32739696,32739815-32740002,32740132-32740330,
32740426-32740604,32740760-32740910,32741165-32741298,
32741436-32741615
Length = 410
Score = 33.9 bits (74), Expect = 0.054
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Frame = +1
Query: 97 DVDETTTHNIQLAEGEKKMSDNILAILEHFKQSDPVGLPG--ADIPEPYAVPDMKQSLSF 270
DVD T L++GEK+ + LA L+ F++ + + +PG E + D +Q S
Sbjct: 56 DVDLTRAKG--LSQGEKEYYEKQLATLKIFEEVEALCMPGEFESDAEVLELEDKEQKQSE 113
Query: 271 ATLYFKNTAVYGISKFRIDYINVEISDMKVQAALTIDTL 387
+ + N A + F++ Y ++ M + AA T+D+L
Sbjct: 114 SAMKISNYANIILLVFKV-YATIKTGSMAI-AASTLDSL 150
>01_01_0536 - 3926450-3928447
Length = 665
Score = 30.3 bits (65), Expect = 0.67
Identities = 18/72 (25%), Positives = 35/72 (48%)
Frame = -1
Query: 405 VVSTCLKSVDC*RGLDLHITYLDVYVINAKFTDSIYSSIFEVKCGER*GLFHIRHGVWLR 226
V+S C K D G+ +H L+ V+ + ++ ++ +CG+ + + G+ +R
Sbjct: 167 VLSACGKGKDLLLGMQVHKRVLESGVLPDQRVENALVDMY-AECGDMDAAWVLFEGMQMR 225
Query: 225 DIGSWESYRIGL 190
+ SW S GL
Sbjct: 226 SMASWTSVISGL 237
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 29.1 bits (62), Expect = 1.5
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Frame = -1
Query: 342 LDVYVINAKFTDSIY--SSIFEV--KCGER*GLFHIRHGVWLRDIGSWESYRIG 193
L Y+I A+F D+I+ SS+ ++ KCG + +G+ DI SW + +G
Sbjct: 528 LHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAMIMG 581
>03_01_0431 + 3324118-3324405,3324513-3324572,3325352-3326143
Length = 379
Score = 28.3 bits (60), Expect = 2.7
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 94 QDVDETTTHNIQLAEGEKKMSDNILAILEHFKQSDPVGLPGADIPEPYAVPDMKQSLSF 270
QDV+ T A E +++D+ L + D G+PG + P V + Q L +
Sbjct: 314 QDVNRTRNQPRNQASNETELTDDFWEELLNEGARDDAGIPGMERRRPRYVDALAQKLGY 372
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 27.9 bits (59), Expect = 3.6
Identities = 18/68 (26%), Positives = 30/68 (44%)
Frame = -1
Query: 408 CVVSTCLKSVDC*RGLDLHITYLDVYVINAKFTDSIYSSIFEVKCGER*GLFHIRHGVWL 229
C +S C + +LH + V +N + + ++ KCGE + I G+
Sbjct: 327 CAISACASLKLLNQAKELHSHAIKVGSVNNVLSGNSLVDMY-AKCGEIVAAWRIFSGIPD 385
Query: 228 RDIGSWES 205
+DI SW S
Sbjct: 386 KDIFSWNS 393
>03_02_0289 -
7115045-7115867,7116373-7116929,7117327-7117544,
7117829-7117928,7118665-7118832
Length = 621
Score = 27.9 bits (59), Expect = 3.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 259 SLSFATLYFKNTAVYGISKFRIDYINVEISDMKVQAALTIDTLQ 390
SL T + A YGISK + Y++ + + V AA T Q
Sbjct: 86 SLILGTEVCERLAYYGISKSLVTYLSTRLHEGNVSAARNFTTWQ 129
>03_05_1130 +
30602452-30602712,30603033-30603950,30605501-30605548,
30605629-30606072
Length = 556
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 127 QLAEGEKKMSDNILAILEHFKQSDPVG 207
Q+A+G+ S ++ +L+HFK S P G
Sbjct: 114 QIADGDPDDSRCVVKLLDHFKHSGPNG 140
>08_02_1417 -
26922775-26922986,26923102-26923291,26923816-26923928,
26924032-26924112,26925329-26926661
Length = 642
Score = 27.1 bits (57), Expect = 6.2
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Frame = -1
Query: 405 VVSTCLKSVDC*RGLDLHITYLDVYVINAKFTDSIYSSIFEV--KCGER*GLFHIRHGVW 232
VVS+C + G LH Y D + + + S+ +S+ ++ KCG+ + I HG+
Sbjct: 215 VVSSCGQMGALDLGRYLH-AYCDGHGLGKEL--SVKNSLIDMYSKCGDVNKAYQIFHGLT 271
Query: 231 LRDIGSW 211
RD+ +W
Sbjct: 272 KRDVFTW 278
>10_01_0053 -
767131-767962,768517-769037,769384-769601,769720-769825,
769958-770017
Length = 578
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 280 YFKNTAVYGISKFRIDYINVEISDMKVQAA 369
+ +N A YGISK + Y+ + + KV AA
Sbjct: 59 FSENLAYYGISKNLVTYLTKILHESKVNAA 88
>01_06_1320 +
36272716-36273339,36274222-36275762,36276349-36276490,
36276622-36276729,36276814-36277026,36277113-36277223,
36278056-36278250,36278874-36279048,36279189-36279226
Length = 1048
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -2
Query: 254 FISGTAYGSGISAPGSPTGSDCLKCSNMASILSL 153
+ A+G G++ PGSP GS S S L L
Sbjct: 631 YYGNLAFGMGMAYPGSPLGSPVASPSGPGSPLRL 664
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,207,185
Number of Sequences: 37544
Number of extensions: 208672
Number of successful extensions: 547
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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