Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A03
         (335 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces pomb...    27   0.77 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   3.1  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   3.1  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    25   4.1  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    25   4.1  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    23   9.4  

>SPAC2F3.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 0.77
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 111 NSQTI*NAMAPSSDWDEIKRLAADFQKAQP*FYF 212
           NS T  N   PS  W E  R+AA +  +Q  +YF
Sbjct: 172 NSPTNENQAQPSIAWSEGHRIAAIWDPSQQAYYF 205


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -3

Query: 102  TTTIYVNYNIISQLFSYTKKIIIAKVTLKLVTI 4
            T  IYVN + IS+ F YT  I+   +  K VTI
Sbjct: 2111 TKNIYVNSDNISETFPYT-YILPQNLLRKFVTI 2142


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 3.1
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 19  ECNFSNYYFLSIGKQL*NNIIIYID-CSSFIS 111
           +C  ++ YFLS  K +   I +Y+D  +SFIS
Sbjct: 223 QCMSTDDYFLSSSKNIQKIIKVYVDMLNSFIS 254


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -1

Query: 272 NFCSINFVTISIQFLSDNLWEVE 204
           NFC    VT  I F    +WE++
Sbjct: 694 NFCETGKVTPQIYFAPQEVWEIK 716


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 4.1
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +1

Query: 259 IEQKLLDVIFTTDGKEYL 312
           IE  L DV+FT+DG E L
Sbjct: 348 IEGVLSDVLFTSDGSEML 365


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 333 PDKLLRS*IFFTISSKYNIKQFLFN 259
           P  +L   IF  IS KY ++QF+++
Sbjct: 486 PTFILLPIIFSMISLKYRLRQFIYS 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,153,890
Number of Sequences: 5004
Number of extensions: 19043
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)