Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A03
         (335 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical pr...    39   0.001
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    26   5.8  
Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical pr...    26   7.7  
U41279-17|AAK31427.1|  179|Caenorhabditis elegans Hypothetical p...    26   7.7  
U41279-16|AAK31416.1|  179|Caenorhabditis elegans Hypothetical p...    26   7.7  

>U61947-7|AAB03137.1|  735|Caenorhabditis elegans Hypothetical
           protein C06G3.9 protein.
          Length = 735

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 232 NCIEIVTKLIEQKLLDVIFTTDGKEYLTSQQL 327
           NCIE++ KLI    +DV++T DG  Y+T   L
Sbjct: 30  NCIEVLQKLIASHRIDVVYTRDGHSYVTKNHL 61


>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
           protein C06A5.1 protein.
          Length = 1932

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -3

Query: 177 QLTALFHPSLTTEPL 133
           Q  ALFHP +TT PL
Sbjct: 654 QRAALFHPKITTNPL 668


>Z70781-3|CAA94833.2|  352|Caenorhabditis elegans Hypothetical
           protein F57A8.5 protein.
          Length = 352

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -3

Query: 123 SFES*YETTTIYVNYNIISQLFSYTKKIIIAKVTLKL 13
           +F + Y   + ++N++ +++L    KKII     LKL
Sbjct: 160 AFLAIYSHISYFLNFDFVNELHDIDKKIIFQHTILKL 196


>U41279-17|AAK31427.1|  179|Caenorhabditis elegans Hypothetical
           protein C17C3.13 protein.
          Length = 179

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 269 FCSINFVTISIQFLSDNLWEVEL 201
           F S+ F+ I++QF  +NL  +EL
Sbjct: 17  FTSMEFLDITLQFNKENLMHIEL 39


>U41279-16|AAK31416.1|  179|Caenorhabditis elegans Hypothetical
           protein C17C3.2 protein.
          Length = 179

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 269 FCSINFVTISIQFLSDNLWEVEL 201
           F S+ F+ I++QF  +NL  +EL
Sbjct: 17  FTSMEFLDITLQFNKENLMHIEL 39


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,176,443
Number of Sequences: 27780
Number of extensions: 98822
Number of successful extensions: 176
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)