Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A01
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    28   0.93 
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    27   1.6  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   5.0  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    25   6.6  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   6.6  
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    25   8.7  

>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -1

Query: 218 DHQFNWSLYSEVVYKTSLSNLLERF*MIDLSSSFNHSTIET 96
           D +++W    E +   SLSNLL     +DLS  ++  + +T
Sbjct: 771 DEKYSWKTALESLSAKSLSNLLVELKQLDLSKEYSKISDDT 811


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 165 QTCFIYHFTIKRPVELMIVKRAGAIIYKVQTRIFNLK 275
           Q C    F +K P+E+         +  V+T++FN+K
Sbjct: 198 QGCLYTIFNLKIPLEMFDTSLDSKFLSNVKTKVFNMK 234


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 348 KRNSQNSVRKCARLTYKAVR 289
           +R SQN + K +RLTYK  R
Sbjct: 25  RRGSQNRISKKSRLTYKFKR 44


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
           Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = -1

Query: 131 LSSSFNHSTIETH--SIYSVLYFLVEDIRIDGIQEKKK 24
           LSS  ++ST + +   +   L+F+ E++R+D + + +K
Sbjct: 451 LSSHLDYSTFKNYLMPLAITLHFISEELRLDSVVKPRK 488


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 272 KIKNPGLHFINNSSCSFNDHQFNWSLYSEV 183
           KI  P LH+ +N   SF   + NW  Y  V
Sbjct: 242 KILWPSLHYQHNEIFSFFHEESNWDDYVAV 271


>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 330 NFVNFASSNLRLS*INNIYTCFKLNHD 410
           NFV++A+  +R++ +NN    +   HD
Sbjct: 447 NFVSYAAGAVRMAALNNSRVIYVATHD 473


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,754,154
Number of Sequences: 5004
Number of extensions: 31708
Number of successful extensions: 94
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)