Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A01
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0191 + 23468410-23468455,23468560-23468699,23469119-234692...    31   0.54 
08_02_0987 + 23334208-23334297,23334422-23335360,23335449-23335730     27   6.6  
07_01_1027 - 8873582-8876275                                           27   8.8  
06_01_0832 - 6269249-6271794,6272083-6272176                           27   8.8  
04_04_0955 + 29640612-29643305                                         27   8.8  
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565...    27   8.8  

>04_04_0191 +
           23468410-23468455,23468560-23468699,23469119-23469201,
           23469346-23469550,23469632-23469735,23470290-23470449
          Length = 245

 Score = 31.1 bits (67), Expect = 0.54
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 204 VELMIVKRAGAIIYKVQTRIFNLKKGVSAARPCMSAERIYVQNFVNFASSN 356
           VE   VK AGAI  K+Q  +F+L   V   R   +  R+   N V  + +N
Sbjct: 156 VEEAFVKTAGAIYKKIQDGVFDLSNEVKFFRNVCNVLRLMESNLVTRSRAN 206


>08_02_0987 + 23334208-23334297,23334422-23335360,23335449-23335730
          Length = 436

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 230 CSFNDHQFNWSLYSEVVYKTSLSNLLER 147
           C F DH F+W+L  E+   T+L+ + ER
Sbjct: 342 CIFYDHMFDWNLKQEI---TALAAIRER 366


>07_01_1027 - 8873582-8876275
          Length = 897

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 411 YHGLV*NTYKYYLS-MTNV--SYLKRNSQNSVRKCARLTY 301
           +H +  + Y ++L+  TN+  S+   N Q+  R  ARLTY
Sbjct: 251 FHNVAQDKYNHFLAPKTNIVESFAATNEQDKARYMARLTY 290


>06_01_0832 - 6269249-6271794,6272083-6272176
          Length = 879

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 411 YHGLV*NTYKYYLS-MTNV--SYLKRNSQNSVRKCARLTY 301
           +H +  + Y ++L+  TN+  S+   N Q+  R  ARLTY
Sbjct: 233 FHNVAQDKYNHFLAPKTNIVESFAATNEQDKARYMARLTY 272


>04_04_0955 + 29640612-29643305
          Length = 897

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 411 YHGLV*NTYKYYLS-MTNV--SYLKRNSQNSVRKCARLTY 301
           +H +  + Y ++L+  TN+  S+   N Q+  R  ARLTY
Sbjct: 251 FHNVAQDKYNHFLAPKTNIVESFAATNEQDKARYMARLTY 290


>01_05_0251 +
           19952882-19955459,19956209-19956245,19956370-19956586,
           19957063-19957221,19957397-19957516,19957609-19957719
          Length = 1073

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 411 YHGLV*NTYKYYLS-MTNV--SYLKRNSQNSVRKCARLTY 301
           +H +  + Y ++L+  TN+  S+   N Q+  R  ARLTY
Sbjct: 251 FHNVAQDKYNHFLAPKTNIVESFAATNEQDKARYMARLTY 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,227,913
Number of Sequences: 37544
Number of extensions: 170019
Number of successful extensions: 341
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)