Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A01
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z81536-5|CAB04366.1|  297|Caenorhabditis elegans Hypothetical pr...    27   6.0  
Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    27   7.9  

>Z81588-3|CAB04715.2|  377|Caenorhabditis elegans Hypothetical
           protein T07D10.3 protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 18/73 (24%), Positives = 32/73 (43%)
 Frame = -1

Query: 248 FINNSSCSFNDHQFNWSLYSEVVYKTSLSNLLERF*MIDLSSSFNHSTIETHSIYSVLYF 69
           F+   +C    HQF +  Y   V   +L  L E    ++  + FN+   +  +IY  +  
Sbjct: 271 FVQVIACKCG-HQFKYCYYQRDVLLRNLPVLREAMEHVEREAPFNNMPEDVCNIYRSIIV 329

Query: 68  LVEDIRIDGIQEK 30
           ++ D+    I EK
Sbjct: 330 VIIDVNQRLINEK 342


>Z81536-5|CAB04366.1|  297|Caenorhabditis elegans Hypothetical
           protein F40D4.6 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 99  NSFNILCTLFSC*RYTYRWYSRKKKKKNSRLVL 1
           N F ++C++FSC    +     +KKKK   + L
Sbjct: 15  NFFGVICSIFSCIMNIFILKKVEKKKKKKEMAL 47


>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 99  NSFNILCTLFSC*RYTYRWYSRKKKKKNSRLVL 1
           N F ++C++FSC       +  KK+KK + +VL
Sbjct: 15  NLFGVICSIFSC---IMNIFILKKEKKKNEMVL 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,492,326
Number of Sequences: 27780
Number of extensions: 172248
Number of successful extensions: 404
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)