Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0003_A01
         (509 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   4.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   4.2  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   5.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   5.6  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   9.8  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    21   9.8  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 96  SFNILCTLFSC*RYTYRWYSR 34
           S +++C   +C    YRWY++
Sbjct: 254 STSLVCVAQACPTPEYRWYAQ 274


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -3

Query: 96  SFNILCTLFSC*RYTYRWYSR 34
           S +++C   +C    YRWY++
Sbjct: 254 STSLVCVAQACPTPEYRWYAQ 274


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 243 YKVQTRIFNLKKGVSAARPCMSAERIYV 326
           Y++  + FN    ++A +P  +A RI++
Sbjct: 493 YRLNHKPFNFHITINADKPMKAAIRIFI 520


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +3

Query: 243 YKVQTRIFNLKKGVSAARPCMSAERIYV 326
           Y++  + FN    ++A +P  +A RI++
Sbjct: 493 YRLNHKPFNFHITINADKPMKAAIRIFI 520


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/30 (23%), Positives = 19/30 (63%)
 Frame = -1

Query: 266 KNPGLHFINNSSCSFNDHQFNWSLYSEVVY 177
           K P +    ++SC+++++ +N + Y ++ Y
Sbjct: 299 KEPKIISSLSNSCNYSNNYYNNNNYKKLYY 328


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 20.6 bits (41), Expect = 9.8
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 39  NTIYTYIFNKKIKYRV 86
           NTI+   +NKK+ Y +
Sbjct: 321 NTIHNNNYNKKLYYNI 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,164
Number of Sequences: 438
Number of extensions: 2327
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14109465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)