Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P24
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   181   6e-47
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   180   2e-46
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    26   3.6  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    26   3.6  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  181 bits (441), Expect = 6e-47
 Identities = 87/164 (53%), Positives = 113/164 (68%)
 Frame = +1

Query: 73  LLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXXXXXX 252
           +L  +++D+  +LAA +H+G++N+  +ME YV+KRR DG H+INL +TWEK         
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 253 XXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 432
             E+PADV VISSR +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV D
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 433 PAQDHQPITEASYVNIPVNSFMQTXEPHLSDLLTIAIPCNTKSF 564
           P  D Q I EAS+VNIPV +   T    + + + +AIP N K +
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDS--ILNHVDVAIPINNKGY 171


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  180 bits (437), Expect = 2e-46
 Identities = 85/166 (51%), Positives = 114/166 (68%)
 Frame = +1

Query: 61  GGLDLLALSEEDVTKMLAATTHLGAENVNFQMETYVYKRRGDGTHVINLRRTWEKXXXXX 240
           G  ++L  ++ED+ ++LAA  H+G++N+  +M+ YV+KRR DG H++NL +TWEK     
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 241 XXXXXXEDPADVFVISSRAFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 420
                 E+PADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 421 IVLDPAQDHQPITEASYVNIPVNSFMQTXEPHLSDLLTIAIPCNTK 558
           +V DP  D Q I EAS+VNIPV +   T    + + + IAIP N K
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDS--ILNHVDIAIPTNNK 168


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 17/80 (21%), Positives = 37/80 (46%), Gaps = 13/80 (16%)
 Frame = -2

Query: 531 QQI*EVRFXCLHKAIYWNVDI*S---FSNWLM----------ILSRVQNNQQPWFAECGL 391
           +QI E     +H+A++ + D  S   +  WLM          ++S +   ++  + +  +
Sbjct: 212 KQILEQELDMIHQAVFTDPDDSSVWIYHRWLMGHCNPNSMTPLISMITIEERIQYLQKEI 271

Query: 390 DLVSKCTRSETSSNWCCASV 331
           +L+ +    E  + WCC S+
Sbjct: 272 ELIQELHEMEPENRWCCESL 291


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -2

Query: 462 FSNWLMILSRVQNNQQPWFA 403
           F N L+++ + Q+N++PW A
Sbjct: 498 FQNALLLVKKTQSNEKPWAA 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,367,990
Number of Sequences: 5004
Number of extensions: 44994
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)