Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P23
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   5.0  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    25   6.6  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    25   6.6  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    25   6.6  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    25   6.6  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    25   6.6  

>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 365  TACLRLHPRFIYCSLRFHFFYTE 297
            +AC  L  + I+CSL+   FY+E
Sbjct: 1005 SACFSLKAKEIFCSLQNEDFYSE 1027


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 384 VVKFYTNCLLAAAPAFHILFTAFSFF 307
           +++FY+NC+L  +    +   +F +F
Sbjct: 263 MIEFYSNCVLVQSLILSLFLISFGYF 288


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 384 VVKFYTNCLLAAAPAFHILFTAFSFF 307
           +++FY+NC+L  +    +   +F +F
Sbjct: 263 MIEFYSNCVLVQSLILSLFLISFGYF 288


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 384 VVKFYTNCLLAAAPAFHILFTAFSFF 307
           +++FY+NC+L  +    +   +F +F
Sbjct: 263 MIEFYSNCVLVQSLILSLFLISFGYF 288


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 177 LISFTRNPNFSRKLKVGTVSYPE 109
           +I F  +PNF R+++V   +YP+
Sbjct: 550 VIMFDSDPNFIRRVEVYKATYPK 572


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = -2

Query: 384 VVKFYTNCLLAAAPAFHILFTAFSFF 307
           +++FY+NC+L  +    +   +F +F
Sbjct: 263 MIEFYSNCVLVQSLILSLFLISFGYF 288


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,937
Number of Sequences: 5004
Number of extensions: 26967
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)