Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P20
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit S...    28   1.3  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    28   1.3  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   3.8  
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   3.8  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   6.7  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    25   8.9  
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    25   8.9  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   8.9  

>SPBC11B10.04c |mrps28||mitochondrial ribosomal protein subunit
           S28|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 288

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 263 DKIGASATAAHTDFINRNDYSLDGKLNLFKSPDTSVDFNA-GFKK 394
           +KI ASAT    DFI  N+      +N F S DTS++ N  GF++
Sbjct: 119 EKIRASATEETKDFIKLNE------VNEFPSSDTSLESNQDGFER 157


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 456 YLESENPKLGSQEDFMKGVSNFLKPALKSTEVSGLLKRF 340
           Y ESE+P + S  D    +S         TE S +++RF
Sbjct: 235 YQESEHPIVSSIRDMADSISGVWSRMFSETEASQVMRRF 273


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = -1

Query: 417 DFMKGVSNFLKPALKSTEVSGLLKRFSFPSRE*SLRLMKSV*AAVADAPILSLNI 253
           DF K   N L           ++  FSF SRE S R +K + +A+   P L ++I
Sbjct: 576 DFAKVSDNLLFSNFVERWFQSVIGVFSFASRENSNRALKILKSAILYRPHLRMSI 630


>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 115

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 386 FKKFDTPFMKSSWEPNFGFSL 448
           F+K++T F+KS +  N G SL
Sbjct: 38  FEKYETSFLKSLFNGNLGLSL 58


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 302 FINRNDYSLDGKLNLFKSPDTSVD 373
           F   N Y   G  N FK PD S+D
Sbjct: 206 FTRENFYQKFGSPNCFKKPDGSID 229


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 230 TVGGGIDYMFKD-KIGASATAAHTDFIN 310
           +VG  I Y  +D K+    TA+H DF+N
Sbjct: 25  SVGRAIRYCKEDGKVEGCETASHVDFLN 52


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 41  AGVALDNVNGHGVSLTDTHIPG 106
           A  A+DN+   G SL   H+PG
Sbjct: 178 AKAAIDNLVSIGASLAHVHVPG 199


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = -3

Query: 253 IVYSATDSVEVGYISDIWHISGGGSLRCDVVVIVVEEIHFAGSCHLVS 110
           +++S     E+G  + +W  + GG L    +V V   + F+ S +L S
Sbjct: 471 VLHSLVFQNELGLTNTVWEAAHGGMLGIKYLVAVKYPLFFSHSDYLDS 518


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,341,699
Number of Sequences: 5004
Number of extensions: 48691
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)