Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P20
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0176 - 13826764-13827064,13827271-13827377,13827474-138278...    29   3.0  
07_03_0658 - 20366559-20367562,20367745-20367937                       29   4.0  
12_02_0412 - 18799217-18801061                                         28   6.9  
12_02_0591 + 20864861-20867329                                         27   9.2  
02_04_0519 + 23619084-23619198,23619468-23619559,23619655-236197...    27   9.2  
01_01_0699 + 5405178-5405356,5405478-5405693,5405808-5405919,540...    27   9.2  

>10_07_0176 -
           13826764-13827064,13827271-13827377,13827474-13827836,
           13827912-13828079,13828153-13828374,13828784-13829023,
           13829640-13829719,13829853-13830018,13830720-13830783,
           13830861-13830962,13831085-13831227,13831370-13831474,
           13831551-13831706,13832125-13832241,13832315-13832392,
           13832466-13832550,13833334-13833455,13833546-13833611,
           13835190-13835284,13835427-13835523,13835873-13835983,
           13836083-13836164,13836292-13836353,13836620-13836685,
           13838002-13838232
          Length = 1142

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 149 HNDYHDITAKASATRNMPDIANVPNFNTVGGGIDYMFKDKIG 274
           +ND H   A++    N P +A   N N   G ++Y+F DK G
Sbjct: 377 NNDLHMYHAES----NTPALARTSNLNEELGQVEYIFSDKTG 414


>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +2

Query: 155 DYHDITAKASATRNMPDIANVPNFNTVGGGIDYMFKDKIGASATAAHTDFINRNDYSLDG 334
           DY D   + + T ++ D+    N      G D  F         AAH +F++R   SLD 
Sbjct: 40  DYPDYYFRITNTEHLTDLKRKLNNLCQASGADKRFFHH-NEEMIAAHPEFLDRATPSLDA 98

Query: 335 KLNL 346
           +L++
Sbjct: 99  RLDI 102


>12_02_0412 - 18799217-18801061
          Length = 614

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 250 VYSATDSVEVGYISDIWHISGGGSLRCDVV 161
           +YS+   +E G   D+W+I GG  L   V+
Sbjct: 23  IYSSETDLEEGVFHDVWNICGGMPLAMIVI 52


>12_02_0591 + 20864861-20867329
          Length = 822

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 133 AGSCHLVSEPGDVCIRETY 77
           AG CHL  EPG V +R  +
Sbjct: 299 AGECHLAGEPGLVAVRRFF 317


>02_04_0519 +
           23619084-23619198,23619468-23619559,23619655-23619735,
           23620426-23620501,23620674-23620696
          Length = 128

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 219 GTLAISGIFLVAEAFAVMSW*SLWKRFTLPAAV 121
           G LA+  IF +     ++ W S+W+ FT  A +
Sbjct: 63  GLLALGNIFFLTGIGLLLGWQSMWQLFTKKANI 95


>01_01_0699 +
           5405178-5405356,5405478-5405693,5405808-5405919,
           5406335-5406397,5406468-5406606,5406822-5406877,
           5408088-5408161,5408270-5408417,5408505-5408678,
           5408809-5408896,5408996-5409109,5409728-5409825,
           5409927-5410017,5410440-5410534,5410672-5410825,
           5410864-5410876,5411276-5411384
          Length = 640

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 21/56 (37%), Positives = 26/56 (46%)
 Frame = -3

Query: 262 FEHIVYSATDSVEVGYISDIWHISGGGSLRCDVVVIVVEEIHFAGSCHLVSEPGDV 95
           FEH +Y    +  V  +S I   S  GS  C     VVE IH    CH+V  P +V
Sbjct: 241 FEHGLYVERWTSFVKELSVIVARSRDGSTVC---YPVVETIHKDNICHVVEAPAEV 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,789,496
Number of Sequences: 37544
Number of extensions: 347920
Number of successful extensions: 926
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)