Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P20
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28412-7|AAC46597.2|  201|Caenorhabditis elegans Hypothetical pr...    28   4.7  
U29382-4|AAG00002.2|  324|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>U28412-7|AAC46597.2|  201|Caenorhabditis elegans Hypothetical
           protein T19C3.6 protein.
          Length = 201

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 519 FALNDITKCIFRQCKCMK*C 578
           FA+ D  K IF +CK MK C
Sbjct: 60  FAMKDTMKSIFAECKAMKTC 79


>U29382-4|AAG00002.2|  324|Caenorhabditis elegans Hypothetical
           protein R03H10.6 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 113 DKVTAAGKVNLFHNDYHDITAKASATRNM 199
           D + A  ++N F +DYH I  K    RNM
Sbjct: 250 DVIVAVEEINDFLDDYHPIENKPPVLRNM 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,991,880
Number of Sequences: 27780
Number of extensions: 278282
Number of successful extensions: 730
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)