Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P18
         (432 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p...    35   0.005
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces...    26   2.2  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   2.8  
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory...    25   3.8  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    25   5.0  
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    24   8.7  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    24   8.7  

>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 71

 Score = 35.1 bits (77), Expect = 0.005
 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = +2

Query: 149 ENWGTEDA--DDEDVSVWEDNWED-DIVQDDF 235
           ENW  +D   D  D ++WE+NW+D DI  DDF
Sbjct: 24  ENWPMKDTELDTGDDTLWENNWDDEDIGDDDF 55


>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 637

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 143 PAENWGTEDADDEDVSVWEDNWEDDIVQDDF 235
           P EN   +  D +DVS+  DN   D+ QD F
Sbjct: 378 PQEN-SAQIYDGKDVSMVNDNMHSDVRQDSF 407


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -2

Query: 182 LRHQHPQFPNFQPGILQIHRPPPINRGL 99
           L HQ+   PN     L ++ P P++RGL
Sbjct: 25  LVHQNHSTPNHASDELSVNDPSPLSRGL 52


>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
           subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 545

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 161 TEDADDEDVSVWEDNWEDD-IVQDDF 235
           T +A  E++  W+DN ED+  V+ DF
Sbjct: 35  TNEAQREEIITWKDNREDEGEVKTDF 60


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 155 NFQPGILQIHRPPPINRGLLFAYQP-LWLRILLFIIIVEINF 33
           NFQ  +L       I+R LLF+ +P L + +  F I + +NF
Sbjct: 383 NFQSSLLSFEWISIISRALLFSPRPSLLISVPAFHIHLRLNF 424


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = -2

Query: 233 NHPVRCHLPNYLPTQTHLRHQHPQFPNFQPGILQIHRPPP 114
           NH   C  P + PTQ H  H  P      P     + PPP
Sbjct: 155 NHVRSC--PPFPPTQHHHPHTRPPHHPPHPHFHNNNYPPP 192


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = -1

Query: 363 KLNITDRIFFLSDNICL 313
           ++N TDRI F+S+ +C+
Sbjct: 40  EVNPTDRIAFISETLCI 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,292,990
Number of Sequences: 5004
Number of extensions: 21446
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)