Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P17
         (588 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    57   2e-09
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.2  
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    25   8.2  
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch...    25   8.2  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.2  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 24/67 (35%), Positives = 36/67 (53%)
 Frame = +1

Query: 190 IDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGT 369
           I NP+Y+G W+P  I NP + G W   +I NP+Y  D +      +  VG +LW ++   
Sbjct: 340 IRNPNYRGPWSPPMIPNPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQPNI 399

Query: 370 VFNNFLV 390
            F+N  V
Sbjct: 400 RFSNIYV 406



 Score = 34.7 bits (76), Expect = 0.010
 Identities = 33/109 (30%), Positives = 36/109 (33%), Gaps = 12/109 (11%)
 Frame = +1

Query: 1   LPPKKIKDPEAKKPEDWXX--XXXXXXXXXXXXXXXXXXXHIPDPDASKXXXXXXXXXXX 174
           LPP +I DPE  KP DW                        IPDPDA K           
Sbjct: 237 LPPVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDAVKPEDWLEDEPLY 296

Query: 175 XXXXXIDNP-----DYKGVWAPKQIDNP-----AYKGPWIHPEIDNPEY 291
                   P     +  G W P +I NP     A  G W  P I NP Y
Sbjct: 297 IPDPEAQKPEDWDDEEDGDWIPSEIINPKCIEGAGCGEWKPPMIRNPNY 345


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 406 LAKEKGEIIKKMQEGEKKMK 465
           L  E GEI+K++ + EKK+K
Sbjct: 206 LLDENGEILKRLVKKEKKLK 225


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +1

Query: 211 GVWAPK-QIDNPAYKGPWIHPEIDNP 285
           G+  PK  +D  +Y G W  P+ D+P
Sbjct: 130 GLGEPKFNVDGTSYDGDWGRPQNDSP 155


>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
           Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 346 LWQVKSGTVFNNFLVTDDPALAKEKGEIIKKMQEGEK 456
           L ++K+G  FN  L   D  +     E+I+ M +G+K
Sbjct: 16  LVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDK 52


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 1   LPPKKIKDPEAKKPEDW 51
           LP  + K P AKKPED+
Sbjct: 168 LPSPEYKAPPAKKPEDY 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.135    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,853,226
Number of Sequences: 5004
Number of extensions: 36196
Number of successful extensions: 89
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)