Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_P17
(588 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 135 3e-32
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 121 5e-28
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 113 1e-25
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 112 2e-25
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 71 9e-13
08_02_1590 + 28074137-28074247,28074791-28074886,28074976-280750... 36 0.018
04_04_1603 - 34716753-34717097,34717512-34717659,34717747-347179... 30 1.2
06_02_0225 + 13257655-13260693 29 2.1
03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026 29 2.7
12_02_0944 - 24666114-24666200,24666287-24666352,24666450-246665... 29 3.6
08_02_0972 - 23187294-23188034 28 4.8
01_05_0428 + 22060431-22060850 28 6.3
07_03_0166 + 14637891-14638469 27 8.4
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 135 bits (326), Expect = 3e-32
Identities = 66/143 (46%), Positives = 80/143 (55%), Gaps = 1/143 (0%)
Frame = +1
Query: 1 LPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXX-XHIPDPDASKXXXXXXXXXXXX 177
LPPK+IKDPEAKKPEDW IPDPDA K
Sbjct: 213 LPPKQIKDPEAKKPEDWDDKEYIPDPEDKKPEGYDDIPKEIPDPDAKKPEDWDDEEDGEW 272
Query: 178 XXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQV 357
I NP+YKG W K+I NP Y+G W P IDNP++ D +Y D + +G++LWQV
Sbjct: 273 TAPTIPNPEYKGPWKQKKIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQV 332
Query: 358 KSGTVFNNFLVTDDPALAKEKGE 426
KSGT+F+NFL+TDDP LAK E
Sbjct: 333 KSGTLFDNFLITDDPELAKTFAE 355
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 121 bits (291), Expect = 5e-28
Identities = 59/143 (41%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Frame = +1
Query: 1 LPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXX-XHIPDPDASKXXXXXXXXXXXX 177
+PPK +DPEAKKPEDW I DP+A+K
Sbjct: 220 IPPKNKRDPEAKKPEDWDDNEYIPDPEDKKPEGYDDIPKEITDPEATKPEDWDDEEDGEW 279
Query: 178 XXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQV 357
I NP+YKG W K++ NP YKG W P I NP+Y D +Y D + +G++LWQV
Sbjct: 280 TAPTIPNPEYKGPWNQKKLKNPNYKGKWKAPLIPNPDYKDDPYIYAFDSLNHIGIELWQV 339
Query: 358 KSGTVFNNFLVTDDPALAKEKGE 426
KSGT+F+N L+TDDP AK+ E
Sbjct: 340 KSGTLFDNILITDDPEYAKKFAE 362
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 113 bits (271), Expect = 1e-25
Identities = 57/143 (39%), Positives = 73/143 (51%), Gaps = 1/143 (0%)
Frame = +1
Query: 1 LPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXX-XHIPDPDASKXXXXXXXXXXXX 177
LPP+KIKD AKKP+DW IPDP K
Sbjct: 211 LPPRKIKDVHAKKPKDWDDREYIEDPDAVKPEGYDSIPKEIPDPKDKKPDTWDDDDDGIW 270
Query: 178 XXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQV 357
I NP YKG W K+I NP YKG W P IDNPE+ D +LY + +G+++WQV
Sbjct: 271 KPRMIPNPAYKGPWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLKYIGIEVWQV 330
Query: 358 KSGTVFNNFLVTDDPALAKEKGE 426
K+G+VF+N L+ DDP A++ E
Sbjct: 331 KAGSVFDNILICDDPEYARKAAE 353
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 112 bits (270), Expect = 2e-25
Identities = 60/155 (38%), Positives = 79/155 (50%), Gaps = 2/155 (1%)
Frame = +1
Query: 1 LPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXXXXX-XHIPDPDASKXXXXXXXXXXXX 177
LPP+KIK+ AKKP+DW IPDP K
Sbjct: 211 LPPRKIKESNAKKPKDWDDREYIEDPDEVKPEGYDSIPKEIPDPKDKKPESWDDDDDGVW 270
Query: 178 XXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQV 357
I NP+YKG W K+I NP YKG W P IDNPE+ D +LY + VG+++WQV
Sbjct: 271 KPRMIPNPEYKGRWKRKKIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLQYVGIEVWQV 330
Query: 358 KSGTVFNNFLVTDDPALAKE-KGEIIKKMQEGEKK 459
K+G+VF+N L+ DDP A+ E+ +E EK+
Sbjct: 331 KAGSVFDNILICDDPEYARSVVDEVRAANKEAEKE 365
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 70.5 bits (165), Expect = 9e-13
Identities = 31/72 (43%), Positives = 44/72 (61%)
Frame = +1
Query: 196 NPDYKGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGTVF 375
NP YKG W IDNP YKG W EI NPEY + + D I ++G+++W ++ G +F
Sbjct: 319 NPAYKGKWHAPLIDNPNYKGIWKPQEIPNPEYF-ELDKPDSDPIAAIGIEIWTMQDGILF 377
Query: 376 NNFLVTDDPALA 411
+N L+ DD +A
Sbjct: 378 DNILIADDEKVA 389
>08_02_1590 +
28074137-28074247,28074791-28074886,28074976-28075023,
28075278-28075430
Length = 135
Score = 36.3 bits (80), Expect = 0.018
Identities = 15/25 (60%), Positives = 20/25 (80%)
Frame = +1
Query: 352 QVKSGTVFNNFLVTDDPALAKEKGE 426
+VKSGT+F+N L+TDDP AK+ E
Sbjct: 37 RVKSGTLFDNILITDDPEYAKKFAE 61
>04_04_1603 -
34716753-34717097,34717512-34717659,34717747-34717984,
34718075-34718285,34718398-34718513,34718698-34718793,
34719279-34719306
Length = 393
Score = 30.3 bits (65), Expect = 1.2
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Frame = +1
Query: 283 PEYTPDSNLYKRDEICSVGLDLWQVKSGTVFNNFLVTDDPALAKEKGEI--IKKMQE 447
PEY L KR +I S G+ + ++ SG + L+ DD L ++ E+ + K++E
Sbjct: 235 PEYAWHGQLTKRADIYSFGVLVLEIVSGKSSSRSLLADDKILLEKAWELHEVGKLKE 291
>06_02_0225 + 13257655-13260693
Length = 1012
Score = 29.5 bits (63), Expect = 2.1
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = -1
Query: 198 VVDHRWFPLSIHLIIPIFRLTGIRVRNVLRFVPVLGFLVFRV 73
+V+ W PLS + IP L+ R+ ++RFV + FLV+RV
Sbjct: 132 LVEKPWKPLSRKVPIPPGILSPYRLLVLVRFVALFLFLVWRV 173
>03_06_0382 - 33530943-33530966,33531160-33531360,33535494-33537026
Length = 585
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/13 (92%), Positives = 12/13 (92%)
Frame = +1
Query: 1 LPPKKIKDPEAKK 39
LPPKK KDPEAKK
Sbjct: 566 LPPKKKKDPEAKK 578
>12_02_0944 -
24666114-24666200,24666287-24666352,24666450-24666515,
24666607-24666825,24666927-24667403
Length = 304
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/52 (28%), Positives = 23/52 (44%)
Frame = +2
Query: 29 KQRNLKIGTTNPQSPTRKTRNPRTGTNLSTFRTLMPVSLKIGMMRWMESGNH 184
K R + T+PQS + R R L T + L+P K+ + +E H
Sbjct: 215 KSRAGRGAATDPQSLYARKRRERINERLKTLQNLVPNGTKVDISTMLEEAVH 266
>08_02_0972 - 23187294-23188034
Length = 246
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/55 (27%), Positives = 27/55 (49%)
Frame = +2
Query: 20 RIQKQRNLKIGTTNPQSPTRKTRNPRTGTNLSTFRTLMPVSLKIGMMRWMESGNH 184
R K+RN++I +T+PQS + R R + + L+P K+ ++ H
Sbjct: 148 RPPKRRNVRI-STDPQSVAARMRRERISERIRILQRLVPGGTKMDTASMLDEAIH 201
>01_05_0428 + 22060431-22060850
Length = 139
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/23 (52%), Positives = 12/23 (52%), Gaps = 1/23 (4%)
Frame = -3
Query: 166 PSHHPNLQAYWHQG-PECAQVCP 101
P HHP A HQG P C CP
Sbjct: 6 PPHHPPCAACAHQGRPSCPAGCP 28
>07_03_0166 + 14637891-14638469
Length = 192
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Frame = +1
Query: 262 IHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGTVFNNF---LVTDDPALAKEKGEII 432
I+PE PE D + Q + GT+ + +V DDP + KGE
Sbjct: 37 INPEKFTPEQKKDFEAMLQQAQDQFLNSFMQTRKGTLVQKYKVKVVADDPGTSSSKGEDG 96
Query: 433 KKMQEGEKKM 462
K+ +G ++
Sbjct: 97 KQAPDGSAQL 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.135 0.425
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,924,879
Number of Sequences: 37544
Number of extensions: 263753
Number of successful extensions: 679
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
- SilkBase 1999-2023 -