Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_P16
(687 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces pomb... 59 7e-10
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 53 4e-08
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc... 48 2e-06
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 42 8e-05
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo... 39 6e-04
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom... 38 0.001
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 38 0.002
SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase |S... 34 0.017
SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 33 0.039
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb... 32 0.068
SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces... 31 0.16
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 31 0.16
SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces po... 31 0.16
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 31 0.21
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 30 0.36
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual 29 0.63
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 29 0.63
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.5
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.5
SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2 |Schizosa... 27 3.4
SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom... 26 4.4
SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr 2... 26 4.4
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 5.9
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual 26 5.9
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 26 5.9
>SPCC736.13 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 339
Score = 58.8 bits (136), Expect = 7e-10
Identities = 40/113 (35%), Positives = 58/113 (51%)
Frame = +3
Query: 348 DLSGKCALITGCNAGIGYETAKSLVRHGCTVLFANRNMEDTERAIQDIIKETDASEDLMK 527
DL+GK AL+TG + GIGY TA L R G V A RN E ++ ++ I E S+ ++
Sbjct: 39 DLTGKVALVTGSSGGIGYVTALELARKGAKVYLAGRNEEKYQKVMKQIHDEVRHSK--IR 96
Query: 528 ALHLT*SSLSSVRKCALDIKMMLSGHLDMLILNAGVCGLPFIETENYIETTFQ 686
L L SV + A + + L +L+ NAG+ PF T++ E Q
Sbjct: 97 FLRLDLLDFESVYQAA-ESFIAKEEKLHILVNNAGIMNPPFELTKDGYELQIQ 148
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 52.8 bits (121), Expect = 4e-08
Identities = 36/116 (31%), Positives = 52/116 (44%), Gaps = 19/116 (16%)
Frame = +3
Query: 15 LDSDSEDDLPSGWEERCTEDGNVYFVNTCTNKVQWTHPQ------TGRKKVI-----PKQ 161
+ SDS +DLP GWE R T+ G YFV+ T W P+ G + P+
Sbjct: 300 MQSDSGNDLPFGWEMRYTDTGRPYFVDHNTRTTTWVDPRNPLVRPNGGSSTVGSLMQPQS 359
Query: 162 ------LPFGWSITADENGKTMYVQSRTGNKTYIDPRLAFAKEEKKHVY--DFRQR 305
LP GW + + + +V T T+ DPRL A ++ Y DFR++
Sbjct: 360 LSHLGPLPSGWEMRLTNSARVYFVDHNTKTTTWDDPRLPSALDQDVPQYKCDFRRK 415
Score = 39.1 bits (87), Expect = 6e-04
Identities = 24/85 (28%), Positives = 37/85 (43%)
Frame = +3
Query: 39 LPSGWEERCTEDGNVYFVNTCTNKVQWTHPQTGRKKVIPKQLPFGWSITADENGKTMYVQ 218
LPSGWE R T VYFV+ T W P+ + + +P D K +Y +
Sbjct: 366 LPSGWEMRLTNSARVYFVDHNTKTTTWDDPRL--PSALDQDVP---QYKCDFRRKLIYFR 420
Query: 219 SRTGNKTYIDPRLAFAKEEKKHVYD 293
S+ G + P K + H+++
Sbjct: 421 SQPGMRPL--PGQCNVKVRRDHIFE 443
Score = 35.1 bits (77), Expect = 0.010
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +3
Query: 24 DSEDDLPSGWEERCTEDGNVYFVNTCTNKVQWTHPQTGRKKV 149
D LP GWE R G Y+V+ T WT P + V
Sbjct: 233 DQYGRLPPGWERRADSLGRTYYVDHNTRTTTWTRPASSTNPV 274
Score = 29.5 bits (63), Expect = 0.48
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 159 QLPFGWSITADENGKTMYVQSRTGNKTYIDP 251
+LP GW AD G+T YV T T+ P
Sbjct: 237 RLPPGWERRADSLGRTYYVDHNTRTTTWTRP 267
>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 767
Score = 47.6 bits (108), Expect = 2e-06
Identities = 32/116 (27%), Positives = 49/116 (42%), Gaps = 18/116 (15%)
Frame = +3
Query: 12 NLDSDSEDDLPSGWEERCTEDGNVYFVNTCTNKVQWTHPQTGR---------KKVIPKQ- 161
N + +LP GWE+R T +G YFV+ T W P+ + I +Q
Sbjct: 281 NATTAGSGELPPGWEQRYTPEGRPYFVDHNTRTTTWVDPRRQQYIRSYGGPNNATIQQQP 340
Query: 162 ------LPFGWSITADENGKTMYVQSRTGNKTYIDPRLAFAKEEKKHVY--DFRQR 305
LP GW + + +V T T+ DPRL + ++ Y DFR++
Sbjct: 341 VSQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPSSLDQNVPQYKRDFRRK 396
Score = 32.3 bits (70), Expect = 0.068
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 159 QLPFGWSITADENGKTMYVQSRTGNKTYIDPRLA 260
+LP GW D G+T YV T + T+I P L+
Sbjct: 206 RLPPGWERRTDNLGRTYYVDHNTRSTTWIRPNLS 239
Score = 31.9 bits (69), Expect = 0.089
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 24 DSEDDLPSGWEERCTEDGNVYFVNTCTNKVQWTHP 128
D LP GWE R G Y+V+ T W P
Sbjct: 202 DQYGRLPPGWERRTDNLGRTYYVDHNTRSTTWIRP 236
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 41.9 bits (94), Expect = 8e-05
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +3
Query: 351 LSGKCALITGCNAGIGYETAKSLVRHGCTV-LFANRNMEDTERAIQDIIKETDASEDLMK 527
L GK LITG + GIG+ AK+ G V L RN ++A++ + D K
Sbjct: 7 LKGKTTLITGGSGGIGFSIAKAFAAAGSNVGLLYGRN----KKALEYAAELRDKHGVQAK 62
Query: 528 ALHLT*SSLSSVRKCALDIKMMLSGHLDMLILNAGVCGLPFIETEN 665
A + S+V + L G LD++I NAG+ +P + E+
Sbjct: 63 AYSCPIENRSAVIETTNQAVEELGGRLDVMIANAGI-AIPHLSLED 107
>SPAC1805.15c |pub2||ubiquitin-protein ligase
Pub2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 671
Score = 39.1 bits (87), Expect = 6e-04
Identities = 15/31 (48%), Positives = 21/31 (67%)
Frame = +3
Query: 39 LPSGWEERCTEDGNVYFVNTCTNKVQWTHPQ 131
LP+GWE R +ED +VYFV+ T W+ P+
Sbjct: 244 LPAGWEMRLSEDYHVYFVDHSTKTTTWSDPR 274
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +3
Query: 162 LPFGWSITADENGKTMYVQSRTGNKTYIDPR 254
LP GW + E+ +V T T+ DPR
Sbjct: 244 LPAGWEMRLSEDYHVYFVDHSTKTTTWSDPR 274
>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 397
Score = 37.9 bits (84), Expect = 0.001
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Frame = +3
Query: 351 LSGKCALITGCNAGIGYETAKSLVRHGCTVLFANRNMED--TERAIQDIIKETDASEDLM 524
++G ++TG ++GIG + L G V+ R D T I D+ K T
Sbjct: 73 MNGMVVMVTGGSSGIGQVVVEKLASLGAQVVILLRTEPDQFTVDYIMDLRKRTKNQLIYT 132
Query: 525 KALHLT*SSLSSVRKCALD-IKMMLSGHLDMLILNAGVCGLPFIETE 662
+ L SS+ SVRK A I LDM++L +GV PF++ +
Sbjct: 133 EVCDL--SSMLSVRKFATKWIDCTPIRRLDMIVLCSGVLLPPFMDRQ 177
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 37.5 bits (83), Expect = 0.002
Identities = 20/69 (28%), Positives = 26/69 (37%)
Frame = +3
Query: 45 SGWEERCTEDGNVYFVNTCTNKVQWTHPQTGRKKVIPKQLPFGWSITADENGKTMYVQSR 224
S W E TED VY+ N+ T K W P+ K W A +GK +
Sbjct: 34 SDWHEVKTEDSRVYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYNVN 93
Query: 225 TGNKTYIDP 251
T + P
Sbjct: 94 TRESVWDIP 102
>SPAC23D3.11 |ayr1||1-acyldihydroxyacetone phosphate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 34.3 bits (75), Expect = 0.017
Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 2/103 (1%)
Frame = +3
Query: 360 KCALITGCN-AGIGYETAKSLVRHGCTVLFANRNMEDTERAIQDIIKETDASEDLMKALH 536
K LITGC+ GIG A + G VL R +E + T A ++ L
Sbjct: 5 KFVLITGCSEGGIGNALALKFHQEGFQVLATARQVERMDNL-------TKAG---LQTLK 54
Query: 537 LT*SSLSSVRKCALDIKMMLSGHLDMLILNAGV-CGLPFIETE 662
L + SVR+ +++ +G L LI NAG C P I+ +
Sbjct: 55 LDVTDEDSVREVEQEVRKFTNGSLHYLINNAGAPCSAPAIDLD 97
>SPAC521.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 259
Score = 33.1 bits (72), Expect = 0.039
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +3
Query: 351 LSGKCALITGCNAGIGYETAKSLVRHGCTVLFANRNMEDTERAIQDIIKETDASEDL-MK 527
L GK LITG ++GIG TA + + L T +++I KE ++ ++ +
Sbjct: 4 LDGKTILITGASSGIGKSTAFEIAKVAKVKLILAARRFST---VEEIAKELESKYEVSVL 60
Query: 528 ALHLT*SSLSSVRKCALDIKMMLSGHLDMLILNAGV 635
L L S L S+ + + +D+LI NAG+
Sbjct: 61 PLKLDVSDLKSIPGVIESLPKEFA-DIDVLINNAGL 95
>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 247
Score = 32.3 bits (70), Expect = 0.068
Identities = 26/92 (28%), Positives = 48/92 (52%)
Frame = +3
Query: 360 KCALITGCNAGIGYETAKSLVRHGCTVLFANRNMEDTERAIQDIIKETDASEDLMKALHL 539
K L+TG + GIG TA++L + V+ +R++ + +I+ D+ +H+
Sbjct: 7 KVILLTGSSKGIGLATAEALQKKA-KVIAVSRSLTPELETL--LIQNPDSF------VHV 57
Query: 540 T*SSLSSVRKCALDIKMMLSGHLDMLILNAGV 635
++ V K +++ + G LD +ILNAGV
Sbjct: 58 K-GDVTEVGKASIETAIKKFGKLDSVILNAGV 88
>SPBC1709.07 |erg27||3-keto sterol reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 338
Score = 31.1 bits (67), Expect = 0.16
Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
Frame = +3
Query: 360 KCALITGCNAGIGYETAKSLVR----------HGCTVLFANRNMEDTERAIQDIIKETDA 509
K ALITG N+G+G+ A L++ TV+ R+ E E A + + +
Sbjct: 5 KYALITGSNSGLGFGIATRLLQFYQPRLQDEPEVFTVILTCRSREKAEDACRRLKEFFPD 64
Query: 510 SEDLMKALHLT*SSLSSVRKCALDIKMMLSGHLDMLILNAGVCGLPFIE 656
+ ++ + L S+++SV DI LD + LNAG L I+
Sbjct: 65 RKIRLEYVLLDLSNMASVEAAVQDIATRFP-KLDFVYLNAGAWDLEGIQ 112
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +3
Query: 351 LSGKCALITGCNAGIGYETAKSLVRHGCTVLFANRNMEDTERAIQ 485
+SGK L+TG IG A+ L++ G V R+ME + I+
Sbjct: 1 MSGKLVLVTGVTGFIGAHVAEQLLQAGYRVRGTVRSMEKADELIR 45
>SPCC1739.08c |||short chain dehydrogenase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 261
Score = 31.1 bits (67), Expect = 0.16
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +3
Query: 321 TAFEVLHGVDLSGKCALITGCNAGIGYETAKSLVRHGCTVLFANRNMEDTERAIQDIIKE 500
T VL L GK ++ G GIG+ A + + G V+ + TE+A + + +E
Sbjct: 9 TTAHVLDLFSLKGKNCVVFGAAKGIGFSIATAFAQAGGNVIITYLTTDPTEKA-KKLAEE 67
Query: 501 TDASEDLMK 527
T +K
Sbjct: 68 TGVQVHTLK 76
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 30.7 bits (66), Expect = 0.21
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 287 YMFLLFFSKCQPWINICFIAGTALHIHSFTILISRYGP 174
Y F + F+ C W+ +C+ + I+ FT L YGP
Sbjct: 371 YWFRVLFNACMRWVLVCWPVLVTMIIYQFT-LREAYGP 407
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = -3
Query: 295 KSYTCFFSSLANASLGSIYVLLPVRLCTYIVLPFSSAVMDHPNGNCL 155
+ + F +A AS G I + +P R + +PF S V+ P +CL
Sbjct: 785 REFKSFAEKIAEASEGRIELDIPFRELAFNGVPFRSNVLLQPTTDCL 831
>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
Length = 503
Score = 29.1 bits (62), Expect = 0.63
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 369 LITGCNAGIGYETAKSLVRHGCTVLFANRNMEDTERAIQDI 491
L+TG + G+G AK LV G V R + + A+ ++
Sbjct: 26 LVTGGSQGLGKAIAKELVLRGANVTIVARTVTKLQEAVAEL 66
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 29.1 bits (62), Expect = 0.63
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +3
Query: 357 GKCALITGCNAGIGYETAKSLVRHGCTVLFANRNMEDTERAIQDI 491
G A++TG GIG E A L G V+ +R E + +++
Sbjct: 57 GYWAVVTGATDGIGKEYATQLAMSGFNVVLISRTQEKLDALAKEL 101
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +3
Query: 84 YFVNTCTNKVQWTHPQTGRKKVIPKQLPFGWSI-TADENGKTMYVQSRTGNKTYIDPRLA 260
+F+ + + VQW QT + G + D +G+ + + +G +ID +A
Sbjct: 2594 FFLESYADPVQWFTTQTNYARSTAVASVLGHVLGLGDRHGQNILIDKTSGEVIHIDLGIA 2653
Query: 261 FAKEEK 278
F + +K
Sbjct: 2654 FEQGKK 2659
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 306 FDGSSTAFEVLHGVDLSGKCALITGCNAGI-GYETAKSLVRHGCTVLFANRNMED 467
F GSS F + H L CA++ N+ + + A +V++ +LFA+ ++
Sbjct: 941 FQGSSQNFSLEHSKFLMSSCAVLNNQNSDLEEKKQAFQMVKNSYLLLFASAKPDE 995
>SPBC17D11.06 |spp2|pri2|DNA primase large subunit Spp2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/49 (22%), Positives = 27/49 (55%)
Frame = +3
Query: 141 KKVIPKQLPFGWSITADENGKTMYVQSRTGNKTYIDPRLAFAKEEKKHV 287
KK++ K+LP ++ G ++ + R + ++ RLAF++ ++ +
Sbjct: 78 KKILDKRLPMSSNMARTVKGNSLDEERRKDHYSHFILRLAFSRSDELRI 126
>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 292
Score = 26.2 bits (55), Expect = 4.4
Identities = 28/88 (31%), Positives = 40/88 (45%)
Frame = +3
Query: 369 LITGCNAGIGYETAKSLVRHGCTVLFANRNMEDTERAIQDIIKETDASEDLMKALHLT*S 548
LITG + G+GY K + G V+ +R D I T L+K L L +
Sbjct: 9 LITGSSKGLGYALVKVGLAQGYNVIACSR--------APDTI--TIEHSKLLK-LKLDVT 57
Query: 549 SLSSVRKCALDIKMMLSGHLDMLILNAG 632
+ SV D K G++D++I NAG
Sbjct: 58 DVKSVETAFKDAKRRF-GNVDIVINNAG 84
>SPBC365.09c |||human KIN homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 304
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Frame = +3
Query: 246 DPRLAFAKEEKKHVYDFRQRF----DGSSTAFEVLHGVDLSGK 362
+ RL E+ K Y+ Q DGSS VLH +DLS K
Sbjct: 167 EQRLRLLDEQIKRAYESAQNNEDNKDGSSREQPVLHEIDLSKK 209
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 31 RMIFHQDGKRDAPKMETYTSSTPVQIKYNGPIPKLVEKK*FLNSYHL 171
++IF+++G+ P YN P+P+L E K F+N H+
Sbjct: 13 KIIFNEEGEGTIDTKPQGVMFDPGVPWYNIPLPELHEDKKFVNVDHV 59
>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 978
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 349 STP*STSNAVEEPSNLCRKSYTCFFSSLANASLGSI 242
+ P T +AV++ N RKSY F L N GSI
Sbjct: 793 AAPQGTDDAVKQ--NDLRKSYISFILQLLNKGFGSI 826
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 25.8 bits (54), Expect = 5.9
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 348 DLSGKCALITGCNAGIGYETAKSLVRHGCTVLFANRNMEDTE 473
D GK I G A IG A+ ++ GC +++ NRN + E
Sbjct: 156 DPYGKRVGIIGMGA-IGKSFAQKILPLGCEIVYHNRNRLEAE 196
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,804
Number of Sequences: 5004
Number of extensions: 72583
Number of successful extensions: 256
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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