Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_P14
(443 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 28 0.74
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p... 27 0.98
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 3.0
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 4.0
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 25 5.2
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi... 25 5.2
SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subu... 25 6.9
SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S... 24 9.1
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 24 9.1
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 27.9 bits (59), Expect = 0.74
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 418 PSVGSRMATLAPRNNPAYKGIARFISLGPNKTMTSSCVKPKFFRLTAHRTDL 263
P++G R T NNPA G F+ + T V+ + R+TA + L
Sbjct: 274 PALGKRRLTTIGINNPAVSGDYGFLYMSEIVQKTPPDVRKQAIRMTAAKVAL 325
>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 669
Score = 27.5 bits (58), Expect = 0.98
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 78 AHNSVHWFMDDLASKIIVETGR 143
AH+S +W +DLA ++VETGR
Sbjct: 624 AHSS-YWSSEDLACFLVVETGR 644
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 25.8 bits (54), Expect = 3.0
Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 13/96 (13%)
Frame = +3
Query: 51 HKQKKMFNHAHNSVHWFMDDLASKIIVETGRPSDRFHLGKLI-------FWSMKEDPDF- 206
H ++ + + + +H F+ +KI+ T SD K I F S+ + F
Sbjct: 397 HGRRLIMKFSDSELHTFLFHCVNKIVANTTENSDSAEAVKFILDSQNFFFESINTEYSFI 456
Query: 207 -----LMQIDGATDESETNGSALNRSVRCAVSLKNF 299
LM ++ + S+ +G ++ C + L NF
Sbjct: 457 IFTNLLMHLEKTSPNSDVDGVSMTILTICKILLNNF 492
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 25.4 bits (53), Expect = 4.0
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 45 LKHKQKKMFNHAHNSVHWFMD 107
LKHK K+MF HA +V +D
Sbjct: 1008 LKHKAKEMFAHAELNVDELID 1028
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 25.0 bits (52), Expect = 5.2
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -2
Query: 316 SSCVKPKF-FRLTAHRTDLFNADPFVSDSSVAPSICIKKSGSSFMLQ 179
S V PKF R+ R D N + + + + C+K GS F+L+
Sbjct: 42 SKSVDPKFAMRILKSRIDHSNPNVQIMALKLTDT-CVKNGGSGFLLE 87
>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1419
Score = 25.0 bits (52), Expect = 5.2
Identities = 11/41 (26%), Positives = 24/41 (58%)
Frame = +3
Query: 288 LKNFGLTQDDVIVLLGPNDINLAIPLYAGLFLGAKVAILDP 410
+KN G+ + DV+++ ++L + + L GA +++DP
Sbjct: 330 VKN-GIERGDVVMVYAYRGVDLVVAVMGVLKAGATFSVIDP 369
>SPBC16H5.06 |rip1||ubiquinol-cytochrome-c reductase complex subunit
5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 228
Score = 24.6 bits (51), Expect = 6.9
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 333 GPNDINLAIPLYAGLFLGAKVAI 401
GP +NLAIP Y F G+K+ I
Sbjct: 207 GPAPLNLAIPAYT--FEGSKIII 227
>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
Dim1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 3 FTVYTKIKVFCQYKLKHKQKKMFNHAHNSVHWFMDDLASKI-IVET 137
+ +Y + + Y+ KH + +N ++W ++D I I+ET
Sbjct: 73 YELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIET 118
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/55 (20%), Positives = 27/55 (49%)
Frame = -2
Query: 370 AYKGIARFISLGPNKTMTSSCVKPKFFRLTAHRTDLFNADPFVSDSSVAPSICIK 206
A+ G+ ++ PN +SC + K R+ ++ ++ ++V+P C++
Sbjct: 219 AHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSN--KKKSLITINNVSPLNCVR 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,782
Number of Sequences: 5004
Number of extensions: 36966
Number of successful extensions: 87
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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