Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P13
         (540 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               25   0.37 
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   2.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   2.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   4.6  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   6.1  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 261 CTSAGAHFNPLKQEHGAPDSDTRHIGDLGNIEASSDGGVTKVC 389
           C   G  F P+   +     + + I  +GN++A  DG V  VC
Sbjct: 770 CEERGILFMPIPNRY----REAKQIYKVGNVQAYIDGNVVFVC 808


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 11/23 (47%), Positives = 11/23 (47%)
 Frame = +3

Query: 198 KGLSKGKHGFHVHEFGDNTNGCT 266
           KGL KG    H    GDN  G T
Sbjct: 9   KGLGKGGAKRHRKVLGDNIQGIT 31


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -2

Query: 443 SASNNAVGSN*RDLRVLNANLSNTTITGSF 354
           SA N + GSN +       N SNTT   SF
Sbjct: 605 SAENLSSGSNNQTSSASRENTSNTTSMESF 634


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 459 PHGLPKCVQQCCWVQLTRSESP 394
           PH +PK +Q+   ++ T   SP
Sbjct: 451 PHAVPKYIQRLKAIRATLKASP 472


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 459 PHGLPKCVQQCCWVQLTRSESP 394
           PH +PK +Q+   ++ T   SP
Sbjct: 366 PHAVPKYIQRLKAIRATLKASP 387


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -1

Query: 459 PHGLPKCVQQCCWVQLTRSESP 394
           PH +PK +Q+   ++ T   SP
Sbjct: 685 PHAVPKYIQRLKAIRATLKASP 706


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 289 GLK*APAEVQPLVLSPN 239
           GL+ A A VQP V+S N
Sbjct: 572 GLRVADASVQPQVISGN 588


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,830
Number of Sequences: 438
Number of extensions: 3240
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)