Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P11
         (521 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein Usp105|Schi...    27   1.3  
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    27   1.3  
SPCC1840.11 |csl4|SPCC965.01|exosome subunit Csl4|Schizosaccharo...    27   1.7  
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom...    26   3.0  

>SPBC4B4.09 |usp105|prp39|U1 snRNP-associated protein
           Usp105|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = +2

Query: 311 GNYEPIKHWTGVVDFNHPNYPPKRYEXTLSPVVG-SKCLIKISDLKLGE 454
           GN E +  W G+   N PNY        L  ++   KC   I+++ + E
Sbjct: 385 GNLEAVLGWVGLERRNAPNYDLTNAHAVLRSIINEGKCNTGITEVLITE 433


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 302 GPSGNYEPIKHWTGVVDFNHPNYPPKRYEXTL 397
           GPS NY       G V+  +PNY  + Y+  L
Sbjct: 158 GPSINYSTAAMLLGAVNIGNPNYEVQNYQLFL 189


>SPCC1840.11 |csl4|SPCC965.01|exosome subunit
           Csl4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 181

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 338 TGVVD--FNHPNYPPKRYEXTLSPVVGSKCLIKISDLKLGEMMINLII 475
           TG+ D   N   YP K  E  + P VGS  L ++S +   +  +N+ +
Sbjct: 32  TGIFDPEKNSVTYPRKVEETAVLPNVGSIVLARVSRINARQATVNISV 79


>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 453

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = -3

Query: 138 TXKLLISRNSVRVA---SCRNSCSPGDPXSSRAPAATAWSSALFPLVR 4
           T  +L+S N+   +   S  N+C   D      PA  AW +   P +R
Sbjct: 185 TNYILVSENATAGSNSLSSYNACPASDADDFTTPALEAWRNVYMPPIR 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,805,111
Number of Sequences: 5004
Number of extensions: 29085
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)