Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P10
         (257 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1XI24 Cluster: M1.BsrDI; n=1; Geobacillus stearothermo...    32   2.2  
UniRef50_A3EKW9 Cluster: Dead/deah box helicase domain protein; ...    30   8.9  

>UniRef50_A1XI24 Cluster: M1.BsrDI; n=1; Geobacillus
           stearothermophilus|Rep: M1.BsrDI - Bacillus
           stearothermophilus (Geobacillus stearothermophilus)
          Length = 633

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 11/48 (22%), Positives = 25/48 (52%)
 Frame = +2

Query: 65  LKYIYSQVIARLLSCEHSIDFDHEYNRSSPYVTPLIKTSMKAALRKLI 208
           +KY+  ++I +  SCE +I +     R   Y+ P  ++ ++  L  ++
Sbjct: 117 IKYVVHEIIVKCQSCEKNISYGEAKKRGRTYLCPYCESKLRFNLENMV 164


>UniRef50_A3EKW9 Cluster: Dead/deah box helicase domain protein;
           n=3; Vibrionaceae|Rep: Dead/deah box helicase domain
           protein - Vibrio cholerae V51
          Length = 1629

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 89  IARLLSCEHSIDFDHEYNRS 148
           +ARLLSC  +ID D  YNR+
Sbjct: 894 LARLLSCAFNIDLDEAYNRA 913


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 234,365,439
Number of Sequences: 1657284
Number of extensions: 3429376
Number of successful extensions: 9018
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9017
length of database: 575,637,011
effective HSP length: 63
effective length of database: 471,228,119
effective search space used: 10367018618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)