Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_P10
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    26   0.72 
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo...    26   0.95 
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    25   1.3  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         24   2.9  
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni...    24   2.9  
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc...    23   6.7  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   8.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    23   8.9  
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc...    23   8.9  

>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 26.2 bits (55), Expect = 0.72
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 41  LLAD*SS*LKYIYSQVIARLLSCEHSI 121
           ++AD  S ++Y+  +  A L+SC HSI
Sbjct: 327 MIADKESNIRYLAFETTAYLISCGHSI 353


>SPAC3F10.16c |||GTP binding protein,
           HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 616

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 101 LSCEHSIDFDHEYNRSSPYVTPLIKTSMKAALRKLIHLGRTRM 229
           LS E  +  D EY + +P+V P++K     A++  ++ GR  M
Sbjct: 506 LSAESQL-VDDEYFQENPHVRPMVK-GTAVAMQGPVYKGRNTM 546


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +2

Query: 197 RKLIHLGRTRMLCLHHQA 250
           R ++  GR R++CLH QA
Sbjct: 591 RYILSAGRDRLVCLHEQA 608


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 232 QHSCPSQMYKLPQGSFH 182
           +H  P  +++LP  SFH
Sbjct: 223 EHQTPENLWRLPYSSFH 239


>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
           Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 346

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 211 MYKLPQGSFHRGLYQGRNVRTAPVVLVVK 125
           M  LPQGSF +GL  G+ +  A + + ++
Sbjct: 1   MIHLPQGSFTQGLIVGQLLTLAIIYVFLR 29


>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1576

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 119 IDFDHEYNRSSPYVTPLIK 175
           +D   E  RS PYV P+IK
Sbjct: 63  LDLCIELGRSYPYVKPVIK 81


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +2

Query: 86  VIARLLSCEHSIDFDHEYNRS-SPYVTPLIKT 178
           V  +LLSC+H ++  +   R+ S  ++  IKT
Sbjct: 113 VFYKLLSCDHIVNLQYPLKRAVSKALSKQIKT 144


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 6/19 (31%), Positives = 14/19 (73%)
 Frame = +1

Query: 25   VYGLSTTRGLIIMTQVYLF 81
            ++GL  T G++++ + YL+
Sbjct: 1749 IFGLEATEGILLLGKQYLY 1767


>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 438

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 28  YGLSTTRGLIIMTQVYLFAGYRASAIVR 111
           YGL+T   ++ + Q++LF+ + +  + R
Sbjct: 60  YGLNTIGKIVYILQIFLFSLFGSCMLFR 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 980,226
Number of Sequences: 5004
Number of extensions: 14997
Number of successful extensions: 45
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)