Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_P10
(257 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0397 - 2877242-2878479,2878557-2878861,2879862-2880549,288... 28 1.2
06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323 26 3.6
02_01_0189 - 1273313-1274157,1274595-1275549 26 3.6
06_03_0195 + 17780203-17781918 25 6.3
04_04_1363 - 32898345-32898371,32898986-32899837,32900234-329005... 25 6.3
01_06_1404 - 37062931-37063086,37064029-37064216,37064296-37064389 25 6.3
01_05_0611 - 23644692-23646439,23647011-23647551,23648851-236489... 25 6.3
12_02_0871 + 23865343-23866016,23866122-23866170,23866276-238663... 25 8.4
01_06_1516 - 37908284-37908497,37909666-37909733,37909809-379101... 25 8.4
01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360 25 8.4
>02_01_0397 -
2877242-2878479,2878557-2878861,2879862-2880549,
2881998-2882016
Length = 749
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 144 LLYSWSKSIECSHDSRRA-ITCE*IYLSH 61
LL SW K + + D+RR + C I+LSH
Sbjct: 234 LLGSWKKQLVIAKDARRLDVLCHRIFLSH 262
>06_01_0289 - 2111768-2114377,2114970-2115025,2115272-2115323
Length = 905
Score = 26.2 bits (55), Expect = 3.6
Identities = 7/15 (46%), Positives = 12/15 (80%)
Frame = +3
Query: 198 GSLYIWEGQECCVFT 242
G+L W+GQ+CC ++
Sbjct: 70 GALRFWQGQDCCAWS 84
>02_01_0189 - 1273313-1274157,1274595-1275549
Length = 599
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 65 LKYIYSQVIARLLSCEHSIDFDHEYNRSSPYVTPLI 172
++Y+ + A L E S+DFD Y RS TPL+
Sbjct: 442 MRYVRASA-AHLGKPEDSVDFDLTYYRSRDPATPLL 476
>06_03_0195 + 17780203-17781918
Length = 571
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +1
Query: 151 SLRYALDKDLYESC-LEEAYTSGKD 222
S++Y LD+DLY C L + Y K+
Sbjct: 85 SIKYRLDRDLYVGCSLSDMYARCKN 109
>04_04_1363 -
32898345-32898371,32898986-32899837,32900234-32900500,
32900723-32901025,32902329-32902433,32903361-32903548,
32903628-32903721
Length = 611
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 157 RYALDKDLYESCLEEAYTSGKDKNVVS 237
R + K+LYE CL++ Y D+N+++
Sbjct: 67 RKEISKELYEFCLDQGYA---DRNLIA 90
>01_06_1404 - 37062931-37063086,37064029-37064216,37064296-37064389
Length = 145
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 157 RYALDKDLYESCLEEAYTSGKDKNVVS 237
R + K+LYE CL++ Y D+N+++
Sbjct: 67 RKEISKELYEFCLDQGYA---DRNLIA 90
>01_05_0611 -
23644692-23646439,23647011-23647551,23648851-23648952,
23649244-23649441
Length = 862
Score = 25.4 bits (53), Expect = 6.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 198 GSLYIWEGQECC 233
G LY W G++CC
Sbjct: 178 GRLYSWRGEDCC 189
>12_02_0871 +
23865343-23866016,23866122-23866170,23866276-23866356,
23866599-23866718,23866957-23867055,23867135-23867194,
23867316-23867410,23867483-23867508,23869212-23869285,
23870194-23870259,23871027-23871099,23871585-23871622,
23873758-23873871,23876079-23876195,23876288-23876368,
23876468-23876536,23876631-23876669,23876809-23876973,
23877380-23877484,23877569-23877637,23877754-23877816,
23877903-23878021,23878124-23878348,23878409-23878610
Length = 940
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 36 VDYSRTNHHDSSISIRRLSR 95
VD + +HDSS+ RRL+R
Sbjct: 493 VDLAMARNHDSSVGKRRLNR 512
>01_06_1516 -
37908284-37908497,37909666-37909733,37909809-37910186,
37910315-37910393,37910433-37910749
Length = 351
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 83 QVIARLLSCEHSIDFDHEYNRSSPY 157
+V A +L CEH IDF+ + Y
Sbjct: 258 KVPALVLDCEHDIDFNKDIEAKRQY 282
>01_06_1385 + 36930377-36930681,36930769-36930895,36931515-36932360
Length = 425
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 130 PRVQQEQSLRYALDKDLYESCL 195
P VQQ+Q ++D+ L+ SCL
Sbjct: 331 PPVQQQQQQGISVDQGLHSSCL 352
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,335,184
Number of Sequences: 37544
Number of extensions: 94779
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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